Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 0.0e+00 1341.3 907 100.0
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 0.0e+00 1112.1 938 82.1
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 6.4e-259 897.9 929 72.3
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 2.1e-249 866.3 933 65.9
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 1.3e-246 857.1 936 66.1
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 3.1e-237 825.9 702 69.7
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 4.1e-237 825.5 931 69.0
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 2.9e-227 792.7 780 77.2
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 6.1e-209 731.9 844 68.5
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 7.7e-196 688.3 749 70.0
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 2.8e-193 679.9 948 60.8
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 2.6e-191 673.3 790 68.1
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 5.8e-183 645.6 950 51.6
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 2.7e-180 636.7 658 57.0
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 1.3e-179 634.4 703 55.5
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 1.5e-178 630.9 661 57.0
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 1.9e-178 630.6 942 51.2
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 9.5e-178 628.2 944 57.0
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.9e-174 616.7 702 55.1
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 6.4e-174 615.5 705 54.6
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 5.4e-173 612.5 668 56.0
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 2.8e-169 600.1 676 54.0
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.1e-168 598.2 722 52.9
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 7.3e-162 575.5 725 51.2
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 9.5e-162 575.1 702 52.8
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 7.6e-159 565.5 759 67.1
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 6.4e-158 562.4 721 51.2
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 7.1e-157 558.9 721 50.9
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 3.5e-156 556.6 731 48.8
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 1.3e-155 554.7 703 53.1
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 2.2e-150 537.3 708 50.0
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 2.9e-150 537.0 735 48.8
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 4.6e-148 529.6 946 48.7
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 4.6e-148 529.6 723 49.8
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 3.0e-147 526.9 664 50.8
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 8.7e-147 525.4 676 50.4
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 2.8e-145 520.4 572 56.6
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 8.1e-145 518.8 759 46.8
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 1.5e-143 514.6 658 50.5
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 3.4e-143 513.5 709 46.8
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 3.4e-143 513.5 673 49.9
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 1.7e-142 511.1 669 50.4
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 1.6e-140 504.6 705 47.8
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 8.7e-139 498.8 718 46.1
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 1.1e-138 498.4 779 44.5
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 7.4e-138 495.7 522 54.6
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 9.6e-138 495.4 697 46.9
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 2.1e-137 494.2 581 53.0
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 1.1e-136 491.9 703 47.1
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 1.7e-134 484.6 712 46.8
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 1.7e-134 484.6 743 45.1
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 4.9e-134 483.0 509 58.7
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 7.1e-133 479.2 688 46.2
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 1.6e-132 478.0 711 45.9
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 3.5e-132 476.9 557 54.0
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 1.3e-131 474.9 695 45.2
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 1.5e-130 471.5 700 45.4
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 7.4e-130 469.2 700 45.0
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 1.4e-128 464.9 550 53.5
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 3.1e-128 463.8 739 44.1
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 3.4e-127 460.3 700 45.4
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 2.5e-125 454.1 788 52.0
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 2.5e-125 454.1 561 53.5
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 1.8e-123 448.0 515 55.0
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 3.9e-123 446.8 662 45.9
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 3.9e-123 446.8 697 43.9
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 8.7e-123 445.7 727 43.2
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 2.5e-122 444.1 518 52.9
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 3.3e-122 443.7 699 43.8
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 3.3e-122 443.7 662 45.3
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 7.4e-122 442.6 662 45.8
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 2.2e-121 441.0 562 52.0
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 2.0e-119 434.5 708 42.8
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 5.9e-119 433.0 764 43.5
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 5.0e-118 429.9 727 42.9
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 3.6e-116 423.7 580 48.8
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 1.1e-112 412.1 708 43.4
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 1.5e-111 408.3 754 56.2
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 7.7e-111 406.0 510 50.8
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 3.2e-109 400.6 688 42.2
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 1.8e-107 394.8 518 50.2
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 1.1e-106 392.1 733 40.2
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 4.8e-105 386.7 558 47.0
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 1.6e-100 371.7 735 37.8
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 4.7e-100 370.2 615 43.9
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 3.7e-97 360.5 740 38.6
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 6.1e-92 343.2 771 36.2
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 2.7e-84 317.8 558 41.4
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 4.0e-83 313.9 788 33.9
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 9.8e-82 309.3 331 57.4
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 7.0e-80 303.1 772 33.5
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 3.8e-78 297.4 344 53.5
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 6.6e-78 296.6 563 38.9
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 2.8e-76 291.2 390 52.8
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 7.0e-72 276.6 350 48.0
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 7.3e-69 266.5 615 36.7
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 7.5e-66 256.5 450 41.1
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 4.6e-63 247.3 514 39.5
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 1.6e-60 238.8 699 32.3
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 6.2e-60 236.9 433 42.3
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 3.4e-50 204.5 521 34.0
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 2.4e-40 171.8 505 33.5
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 8.7e-38 163.3 163 56.4
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 1.4e-35 156.0 148 56.1
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 1.4e-35 156.0 147 57.8
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 6.9e-35 153.7 141 57.4
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 9.9e-34 149.8 145 56.6
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 2.7e-31 141.7 148 54.7
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 1.5e-29 136.0 144 52.1
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 1.9e-29 135.6 135 57.8
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 3.3e-29 134.8 149 50.3
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 1.1e-24 119.8 146 50.0
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 4.8e-20 104.4 181 43.1
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 3.1e-11 75.1 68 52.9
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-09 70.1 79 46.8
Hund24438 Selenicereus undatus HOM05D002594 ORTHO05D003499 5.5e-08 64.3 107 32.7
Rhsim03G0093900 Rhododendron simsii HOM05D002594 ORTHO05D003499 3.5e-07 61.6 105 31.4
C02p33950 Brassica napus HOM05D014849 ORTHO05D016773 6.1e-07 60.8 56 58.9
BolC2t09315H Brassica oleracea HOM05D014849 ORTHO05D016773 6.1e-07 60.8 56 58.9
VMungo0720G1145 Vigna mungo HOM05D002594 ORTHO05D003499 1.8e-06 59.3 104 30.8
Lsat_1_v5_gn_6_65541 Lactuca sativa HOM05D002594 ORTHO05D003499 3.0e-06 58.5 116 31.9
vmacro07278 Vaccinium macrocarpon HOM05D002594 ORTHO05D003499 3.0e-06 58.5 105 29.5
Haze_03325 Corylus avellana HOM05D002594 ORTHO05D003499 3.9e-06 58.2 109 30.3
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 3.9e-06 58.2 128 30.5
ATR0618G341 Amborella trichopoda HOM05D002594 ORTHO05D003499 5.1e-06 57.8 99 30.3
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 5.1e-06 57.8 93 33.3
PGSC0003DMG400002827 Solanum tuberosum HOM05D002594 ORTHO05D003499 5.1e-06 57.8 105 34.3
TAR371G1001 Trochodendron aralioides HOM05D002594 ORTHO05D003499 5.1e-06 57.8 113 31.0
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 6.7e-06 57.4 99 33.3
Peaxi162Scf00036g01621 Petunia axillaris HOM05D002594 ORTHO05D003499 6.7e-06 57.4 102 35.3
TWI74G1222 Tripterygium wilfordii HOM05D002594 ORTHO05D003499 6.7e-06 57.4 123 31.7
MSTRG.7588 Avicennia marina HOM05D002594 ORTHO05D003499 8.7e-06 57.0 105 30.5
BolC1t01000H Brassica oleracea HOM05D014849 ORTHO05D016773 8.7e-06 57.0 55 56.4
Cre06.g307450 Chlamydomonas reinhardtii HOM05D002594 ORTHO05D003499 8.7e-06 57.0 63 38.1
Nitab4.5_0000688g0290 Nicotiana tabacum HOM05D002594 ORTHO05D003499 8.7e-06 57.0 97 35.1


User provided reference genes

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