Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g074180 Medicago truncatula HOM05D001165 ORTHO05D001347 2.5e-64 248.8 146 100.0
Ca_25573_v3 Cicer arietinum L. HOM05D001165 ORTHO05D001347 5.3e-22 108.2 212 35.4
TPR.G32699 Trifolium pratense HOM05D001165 ORTHO05D001347 7.7e-21 104.4 212 34.9
TPR.G25460 Trifolium pratense HOM05D001165 ORTHO05D001347 4.2e-19 98.6 212 34.0
Medtr6g088715 Medicago truncatula HOM05D001165 ORTHO05D001347 1.1e-16 90.5 212 32.1
Medtr5g074190 Medicago truncatula HOM05D001165 ORTHO05D010351 2.0e-16 89.7 55 76.4
Medtr8g062550 Medicago truncatula HOM05D001165 ORTHO05D001347 4.4e-16 88.6 65 72.3
Medtr5g066780 Medicago truncatula HOM05D001165 ORTHO05D001347 5.7e-16 88.2 156 39.1
arahy.Tifrunner.gnm1.ann1.FW39NC Arachis hypogaea HOM05D001165 ORTHO05D001347 9.7e-16 87.4 209 31.1
arahy.Tifrunner.gnm1.ann1.IN8D84 Arachis hypogaea HOM05D001165 ORTHO05D001347 6.3e-15 84.7 213 30.0
Lj2g0012913 Lotus japonicus HOM05D001165 ORTHO05D001347 1.8e-14 83.2 212 32.1
Lalb_Chr24g0397301 Lupinus albus HOM05D001165 ORTHO05D001347 2.4e-14 82.8 210 29.0
MELO3C015649.2 Cucumis melo HOM05D001165 ORTHO05D001347 9.1e-14 80.9 209 30.1
Haze_22993 Corylus avellana HOM05D001165 ORTHO05D001347 7.7e-13 77.8 170 33.5
Glyma.01G007800 Glycine max HOM05D001165 ORTHO05D001347 7.7e-13 77.8 211 28.9
Lj4g0017684 Lotus japonicus HOM05D001165 ORTHO05D001347 7.7e-13 77.8 212 30.2
DCAR_019914 Daucus carota HOM05D001165 ORTHO05D001347 1.7e-12 76.6 157 33.8
Sed0019999 Sechium edule HOM05D001165 ORTHO05D001347 5.0e-12 75.1 213 29.1
ClCG03G013970 Citrullus lanatus HOM05D001165 ORTHO05D001347 6.5e-12 74.7 211 27.5
CsaV3_1G042250 Cucumis sativus L. HOM05D001165 ORTHO05D001347 6.5e-12 74.7 217 28.6
Sed0004362 Sechium edule HOM05D001165 ORTHO05D001347 3.2e-11 72.4 211 28.9
Atru.chr3.2208 Acer truncatum HOM05D001165 ORTHO05D001347 5.5e-11 71.6 202 28.2
Ciclev10014232m.g Citrus clementina HOM05D001165 ORTHO05D001347 7.2e-11 71.2 205 28.3
Lsat_1_v5_gn_4_68381 Lactuca sativa HOM05D001165 ORTHO05D001347 7.2e-11 71.2 204 27.5
VMungo0464G1904 Vigna mungo HOM05D001165 ORTHO05D001347 1.2e-10 70.5 212 27.4
CiPaw.13G171700 Carya illinoinensis HOM05D001165 ORTHO05D001347 2.7e-10 69.3 77 49.4
Hund21090 Selenicereus undatus HOM05D001165 ORTHO05D001347 8.0e-10 67.8 162 30.9
Phvul.004G176100 Phaseolus vulgaris HOM05D001165 ORTHO05D001347 1.0e-09 67.4 211 28.4
RcHm_v2.0_Chr2g0085701 Rosa chinensis HOM05D001165 ORTHO05D001347 1.8e-09 66.6 207 28.0
THA.LOC104815273 Tarenaya hassleriana HOM05D001165 ORTHO05D001347 1.8e-09 66.6 210 29.5
Ciclev10000251m.g Citrus clementina HOM05D001165 ORTHO05D001347 2.3e-09 66.2 196 27.0
Cfa009624 Carpinus fangiana HOM05D001165 ORTHO05D001347 3.0e-09 65.9 197 27.9
Thecc.09G214800 Theobroma cacao HOM05D001165 ORTHO05D001347 3.0e-09 65.9 210 28.1
Dinv13422 Davidia involucrata HOM05D001165 ORTHO05D001347 4.0e-09 65.5 212 27.4
FvH4_1g00970 Fragaria vesca HOM05D001165 ORTHO05D001347 4.0e-09 65.5 79 44.3
FAN28G2049 Fragaria x ananassa HOM05D001165 ORTHO05D001347 4.0e-09 65.5 79 44.3
Gohir.D07G048800 Gossypium hirsutum HOM05D001165 ORTHO05D001347 4.0e-09 65.5 200 27.5
Gorai.001G052000 Gossypium raimondii HOM05D001165 ORTHO05D001347 4.0e-09 65.5 200 27.5
Lj6C822T7 Lonicera japonica HOM05D001165 ORTHO05D001347 4.0e-09 65.5 204 28.4
CAN.G140.16 Capsicum annuum HOM05D001165 ORTHO05D001347 5.2e-09 65.1 195 30.8
FAN23G1830 Fragaria x ananassa HOM05D001165 ORTHO05D001347 5.2e-09 65.1 81 43.2
DCAR_006422 Daucus carota HOM05D001165 ORTHO05D001347 6.7e-09 64.7 197 27.9
Gohir.A07G044300 Gossypium hirsutum HOM05D001165 ORTHO05D001347 6.7e-09 64.7 200 28.0
Manes.03G089100 Manihot esculenta HOM05D001165 ORTHO05D001347 6.7e-09 64.7 205 29.8
CAN.G575.11 Capsicum annuum HOM05D001165 ORTHO05D001347 8.8e-09 64.3 194 29.4
Lj5g0010349 Lotus japonicus HOM05D001165 ORTHO05D001347 1.2e-08 63.9 212 28.8
Lj5g0018302 Lotus japonicus HOM05D001165 ORTHO05D001347 1.2e-08 63.9 212 28.8
Lj5g0026814 Lotus japonicus HOM05D001165 ORTHO05D001347 1.2e-08 63.9 212 28.8
ECA246G0530 Erigeron canadensis HOM05D001165 ORTHO05D001347 1.5e-08 63.5 201 26.4
HanXRQChr15g0479131 Helianthus annuus HOM05D001165 ORTHO05D001347 1.5e-08 63.5 204 26.5
Prupe.6G011600 Prunus persica HOM05D001165 ORTHO05D001347 1.5e-08 63.5 220 26.4
Solyc12g100330.2 Solanum lycopersicum HOM05D001165 ORTHO05D001347 1.5e-08 63.5 194 29.4
Sopen12g034960 Solanum pennellii HOM05D001165 ORTHO05D001347 1.5e-08 63.5 194 29.4
Duzib205G0564 Durio zibethinus HOM05D001165 ORTHO05D001347 2.0e-08 63.2 200 29.0
Medtr7g007090 Medicago truncatula HOM05D001165 ORTHO05D001347 2.0e-08 63.2 205 27.8
BcaC05g25016 Brassica carinata HOM05D001165 ORTHO05D001347 2.6e-08 62.8 153 31.4
Dinv24043 Davidia involucrata HOM05D001165 ORTHO05D001347 2.6e-08 62.8 83 45.8
Duzib068G0158 Durio zibethinus HOM05D001165 ORTHO05D001347 3.3e-08 62.4 200 28.5
Phvul.002G113900 Phaseolus vulgaris HOM05D001165 ORTHO05D001347 3.3e-08 62.4 88 44.3
Aa31LG2G21870 Aethionema arabicum HOM05D001165 ORTHO05D001347 4.4e-08 62.0 212 25.9
Hma1.2p1_1813F.1_g303890 Hydrangea macrophylla HOM05D001165 ORTHO05D001347 4.4e-08 62.0 77 45.5
Lsat_1_v5_gn_6_36561 Lactuca sativa HOM05D001165 ORTHO05D001347 4.4e-08 62.0 85 42.4
Nn2g15742 Nelumbo nucifera HOM05D001165 ORTHO05D001347 4.4e-08 62.0 78 43.6
PGSC0003DMG400004285 Solanum tuberosum HOM05D001165 ORTHO05D001347 4.4e-08 62.0 194 29.9
Lalb_Chr16g0377271 Lupinus albus HOM05D001165 ORTHO05D001347 7.5e-08 61.2 184 29.9
Aqoxy6G02964 Aquilegia oxysepala HOM05D001165 ORTHO05D001347 9.7e-08 60.8 83 45.8
COL.COLO4_10449 Corchorus olitorius HOM05D001165 ORTHO05D001347 9.7e-08 60.8 207 26.6
HanXRQChr02g0054041 Helianthus annuus HOM05D001165 ORTHO05D001347 9.7e-08 60.8 58 48.3
MBI13_g29649_MAGBIO Magnolia biondii HOM05D001165 ORTHO05D001347 9.7e-08 60.8 84 42.9
Mapoly0060s0056 Marchantia polymorpha HOM05D001165 ORTHO05D001347 9.7e-08 60.8 43 60.5
Thecc.02G019200 Theobroma cacao HOM05D001165 ORTHO05D001347 9.7e-08 60.8 71 52.1
CANSAT64G0692 Cannabis sativa HOM05D001165 ORTHO05D001347 1.3e-07 60.5 71 47.9
Carub.0002s1645 Capsella rubella HOM05D001165 ORTHO05D001347 1.3e-07 60.5 208 26.0
COL.COLO4_10748 Corchorus olitorius HOM05D001165 ORTHO05D001347 1.3e-07 60.5 208 26.4
Eucgr.B02615 Eucalyptus grandis HOM05D001165 ORTHO05D001347 1.3e-07 60.5 74 47.3
Nitab4.5_0004389g0060 Nicotiana tabacum HOM05D001165 ORTHO05D001347 1.3e-07 60.5 196 29.1
Rhsim05G0215600 Rhododendron simsii HOM05D001165 ORTHO05D001347 1.3e-07 60.5 195 28.2
Cpa.g.sc27.168 Carica papaya HOM05D001165 ORTHO05D001347 1.7e-07 60.1 81 40.7
Cpa.g.sc48.151 Carica papaya HOM05D001165 ORTHO05D001347 1.7e-07 60.1 209 26.3
Ca_24958_v3 Cicer arietinum L. HOM05D001165 ORTHO05D001347 1.7e-07 60.1 81 44.4
Lalb_Chr09g0321331 Lupinus albus HOM05D001165 ORTHO05D001347 1.7e-07 60.1 76 48.7
Potri.001G009600 Populus trichocarpa HOM05D001165 ORTHO05D001347 1.7e-07 60.1 80 42.5
Sabra01G0007500 Salix brachista HOM05D001165 ORTHO05D001347 1.7e-07 60.1 80 42.5
ATR0598G105 Amborella trichopoda HOM05D001165 ORTHO05D001347 2.2e-07 59.7 210 25.7
CSS0034027 Camellia sinensis var. sinensis HOM05D001165 ORTHO05D001347 2.2e-07 59.7 214 28.0
AUR62001932 Chenopodium quinoa HOM05D001165 ORTHO05D001347 2.2e-07 59.7 80 46.2
TAR369G1100 Trochodendron aralioides HOM05D001165 ORTHO05D001347 2.2e-07 59.7 78 44.9
Actinidia16271 Actinidia chinensis HOM05D001165 ORTHO05D001347 2.8e-07 59.3 210 26.7
CSS0038763 Camellia sinensis var. sinensis HOM05D001165 ORTHO05D001347 2.8e-07 59.3 215 27.9
Lsat_1_v5_gn_3_37841 Lactuca sativa HOM05D001165 ORTHO05D001347 2.8e-07 59.3 84 45.2
PGR119G1059 Punica granatum HOM05D001165 ORTHO05D001347 2.8e-07 59.3 206 25.2
vmacro22119 Vaccinium macrocarpon HOM05D001165 ORTHO05D001347 2.8e-07 59.3 84 41.7
Medtr6g084890 Medicago truncatula HOM05D001165 ORTHO05D001347 3.7e-07 58.9 77 42.9
RcHm_v2.0_Chr4g0444071 Rosa chinensis HOM05D001165 ORTHO05D001347 3.7e-07 58.9 206 27.7
AL2G28960 Arabidopsis lyrata HOM05D001165 ORTHO05D001347 4.8e-07 58.5 73 46.6
AUR62003878 Chenopodium quinoa HOM05D001165 ORTHO05D001347 4.8e-07 58.5 203 26.6
Lj2g0018357 Lotus japonicus HOM05D001165 ORTHO05D001347 4.8e-07 58.5 68 45.6
Sed0025306 Sechium edule HOM05D001165 ORTHO05D001347 4.8e-07 58.5 85 40.0
TWI60G0596 Tripterygium wilfordii HOM05D001165 ORTHO05D001347 4.8e-07 58.5 197 26.4
Atru.chr6.2999 Acer truncatum HOM05D001165 ORTHO05D001347 6.3e-07 58.2 71 47.9
Lsat_1_v5_gn_2_113601 Lactuca sativa HOM05D001165 ORTHO05D001347 6.3e-07 58.2 84 44.0
Hund16326 Selenicereus undatus HOM05D001165 ORTHO05D001347 6.3e-07 58.2 73 41.1
HPP92_008382 Vanilla planifolia HOM05D001165 ORTHO05D001347 6.3e-07 58.2 183 27.3
Aqoxy2G04079 Aquilegia oxysepala HOM05D001165 ORTHO05D001347 8.2e-07 57.8 72 47.2
ECA247G0380 Erigeron canadensis HOM05D001165 ORTHO05D001347 8.2e-07 57.8 76 39.5
Manes.09G037800 Manihot esculenta HOM05D001165 ORTHO05D001347 8.2e-07 57.8 82 43.9
PSO384G3590 Papaver somniferum HOM05D001165 ORTHO05D001347 8.2e-07 57.8 86 39.5
Actinidia06857 Actinidia chinensis HOM05D001165 ORTHO05D001347 1.1e-06 57.4 212 27.4
Aqoxy4G01202 Aquilegia oxysepala HOM05D001165 ORTHO05D001347 1.1e-06 57.4 73 43.8
MSTRG.25714 Avicennia marina HOM05D001165 ORTHO05D001347 1.1e-06 57.4 44 59.1
CDE05G1370 Ceratophyllum demersum HOM05D001165 ORTHO05D001347 1.1e-06 57.4 51 52.9
CsaV3_3G001160 Cucumis sativus L. HOM05D001165 ORTHO05D001347 1.1e-06 57.4 84 42.9
ECA240G1280 Erigeron canadensis HOM05D001165 ORTHO05D001347 1.1e-06 57.4 44 59.1
ECA246G0534 Erigeron canadensis HOM05D001165 ORTHO05D001347 1.1e-06 57.4 65 43.1
Medtr5g023660 Medicago truncatula HOM05D001165 ORTHO05D001347 1.1e-06 57.4 71 43.7
RcHm_v2.0_Chr4g0398431 Rosa chinensis HOM05D001165 ORTHO05D001347 1.1e-06 57.4 73 38.4
GSVIVG01024446001 Vitis vinifera HOM05D001165 ORTHO05D001347 1.1e-06 57.4 44 59.1
EL10Ac6g15749 Beta vulgaris HOM05D001165 ORTHO05D001347 1.4e-06 57.0 79 44.3
MD11G1012800 Malus domestica HOM05D001165 ORTHO05D001347 1.4e-06 57.0 69 46.4
Nn1g02006 Nelumbo nucifera HOM05D001165 ORTHO05D001347 1.4e-06 57.0 42 64.3
SMO143G0079 Selaginella moellendorffii HOM05D001165 ORTHO05D001347 1.4e-06 57.0 51 54.9
TPR.G19244 Trifolium pratense HOM05D001165 ORTHO05D001347 1.4e-06 57.0 47 55.3
BcaB02g09844 Brassica carinata HOM05D001165 ORTHO05D001347 1.8e-06 56.6 173 26.6
ClCG10G001140 Citrullus lanatus HOM05D001165 ORTHO05D001347 1.8e-06 56.6 85 41.2
FvH4_2g39560 Fragaria vesca HOM05D001165 ORTHO05D001347 1.8e-06 56.6 68 42.6
SEGI_26632 Sequoiadendron giganteum HOM05D001165 ORTHO05D001347 1.8e-06 56.6 77 44.2
Sc19g0000230 Simmondsia chinensis HOM05D001165 ORTHO05D001347 1.8e-06 56.6 58 48.3
TPR.G25144 Trifolium pratense HOM05D001165 ORTHO05D001347 1.8e-06 56.6 47 55.3
TAR633G2726 Trochodendron aralioides HOM05D001165 ORTHO05D001347 1.8e-06 56.6 78 41.0
VMungo1215G1000 Vigna mungo HOM05D001165 ORTHO05D001347 1.8e-06 56.6 79 44.3
Lj1C16T19 Lonicera japonica HOM05D001165 ORTHO05D001347 2.4e-06 56.2 73 43.8
Sp2g28030 Schrenkiella parvula HOM05D001165 ORTHO05D001347 2.4e-06 56.2 175 25.7
TAR374G0107 Trochodendron aralioides HOM05D001165 ORTHO05D001347 2.4e-06 56.2 80 41.2
Carub.0002s2681 Capsella rubella HOM05D001165 ORTHO05D001347 3.1e-06 55.8 79 44.3
HanXRQChr17g0541631 Helianthus annuus HOM05D001165 ORTHO05D001347 3.1e-06 55.8 65 43.1
QL06p052529 Quercus lobata HOM05D001165 ORTHO05D001347 3.1e-06 55.8 68 47.1
Sc16g0012010 Simmondsia chinensis HOM05D001165 ORTHO05D001347 3.1e-06 55.8 77 40.3
Actinidia01273 Actinidia chinensis HOM05D001165 ORTHO05D001347 4.1e-06 55.5 44 61.4
AUR62019205 Chenopodium quinoa HOM05D001165 ORTHO05D001347 4.1e-06 55.5 78 42.3
COL.COLO4_14287 Corchorus olitorius HOM05D001165 ORTHO05D001347 4.1e-06 55.5 211 27.0
DCAR_005032 Daucus carota HOM05D001165 ORTHO05D001347 4.1e-06 55.5 74 39.2
Psat2g130080 Pisum sativum HOM05D001165 ORTHO05D001347 4.1e-06 55.5 60 46.7
SalBow4G2525 Salvia bowleyana HOM05D001165 ORTHO05D001347 4.1e-06 55.5 47 57.4
SGA_v2.0_scaffold18G08504 Striga asiatica HOM05D001165 ORTHO05D001347 4.1e-06 55.5 211 27.0
Aqoxy1G04267 Aquilegia oxysepala HOM05D001165 ORTHO05D001347 5.3e-06 55.1 71 36.6
CSS0033366 Camellia sinensis var. sinensis HOM05D001165 ORTHO05D001347 5.3e-06 55.1 44 61.4
Cc01_g01020 Coffea canephora HOM05D001165 ORTHO05D001347 5.3e-06 55.1 206 24.8
MELO3C013806.2 Cucumis melo HOM05D001165 ORTHO05D001347 5.3e-06 55.1 97 38.1
QL01p010304 Quercus lobata HOM05D001165 ORTHO05D001347 5.3e-06 55.1 71 43.7
GSVIVG01033464001 Vitis vinifera HOM05D001165 ORTHO05D001347 5.3e-06 55.1 88 40.9
Atru.chr6.1579 Acer truncatum HOM05D001165 ORTHO05D001347 7.0e-06 54.7 55 52.7
AagrBONN_evm.TU.Sc2ySwM_368.396 Anthoceros agrestis HOM05D001165 ORTHO05D001347 7.0e-06 54.7 43 53.5
EL10Ac3g05097 Beta vulgaris HOM05D001165 ORTHO05D001347 7.0e-06 54.7 55 47.3
Nitab4.5_0001620g0010 Nicotiana tabacum HOM05D001165 ORTHO05D001347 7.0e-06 54.7 72 43.1
Nitab4.5_0005477g0020 Nicotiana tabacum HOM05D001165 ORTHO05D001347 7.0e-06 54.7 72 43.1
PGR031G1844 Punica granatum HOM05D001165 ORTHO05D001347 7.0e-06 54.7 46 56.5
unitig_37.g12123 Utricularia gibba HOM05D001165 ORTHO05D001347 7.0e-06 54.7 48 50.0
vmacro23308 Vaccinium macrocarpon HOM05D001165 ORTHO05D001347 7.0e-06 54.7 44 59.1
Actinidia14759 Actinidia chinensis HOM05D001165 ORTHO05D001347 9.1e-06 54.3 50 56.0
arahy.Tifrunner.gnm1.ann1.LB5LIC Arachis hypogaea HOM05D001165 ORTHO05D001347 9.1e-06 54.3 43 60.5
AUR62000035 Chenopodium quinoa HOM05D001165 ORTHO05D001347 9.1e-06 54.3 212 25.5
Dinv15838 Davidia involucrata HOM05D001165 ORTHO05D001347 9.1e-06 54.3 44 59.1
ECA246G3701 Erigeron canadensis HOM05D001165 ORTHO05D001347 9.1e-06 54.3 85 41.2
Migut.A00577 Erythranthe guttata HOM05D001165 ORTHO05D001347 9.1e-06 54.3 44 56.8
Thhalv10018159m.g Eutrema salsugineum HOM05D001165 ORTHO05D001347 9.1e-06 54.3 64 46.9
HanXRQChr17g0543611 Helianthus annuus HOM05D001165 ORTHO05D001347 9.1e-06 54.3 71 39.4
HanXRQChr17g0553941 Helianthus annuus HOM05D001165 ORTHO05D001347 9.1e-06 54.3 44 56.8


User provided reference genes

Program Settings