Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 9.1e-122 440.3 226 100.0
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 2.3e-109 399.1 207 99.0
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 6.4e-107 391.0 225 92.0
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 6.4e-99 364.4 207 89.4
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 3.2e-98 362.1 229 83.0
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 2.7e-97 359.0 207 88.4
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 7.8e-97 357.5 207 87.0
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.0e-96 355.5 207 86.5
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 3.9e-96 355.1 207 86.5
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 3.9e-96 355.1 207 86.5
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 3.9e-96 355.1 207 86.5
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 3.9e-96 355.1 207 86.5
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 8.6e-96 354.0 212 85.8
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 2.5e-95 352.4 207 87.0
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 3.3e-95 352.1 210 86.7
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 3.3e-95 352.1 207 86.0
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 1.2e-94 350.1 207 87.0
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.1e-94 349.4 207 86.5
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 2.1e-94 349.4 206 85.4
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 2.1e-94 349.4 204 86.8
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 2.8e-94 349.0 207 85.0
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 2.8e-94 349.0 207 85.5
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 2.8e-94 349.0 207 86.5
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.6e-94 348.6 204 85.8
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 6.2e-94 347.8 207 85.5
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 6.2e-94 347.8 206 85.4
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 8.1e-94 347.4 207 85.5
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 8.1e-94 347.4 207 85.5
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 8.1e-94 347.4 206 85.4
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 1.8e-93 346.3 207 85.0
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 4.0e-93 345.1 207 81.6
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 4.0e-93 345.1 207 84.5
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 4.0e-93 345.1 207 81.6
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 8.9e-93 344.0 200 86.0
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 1.2e-92 343.6 207 83.6
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.2e-92 343.6 206 83.5
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 1.2e-92 343.6 207 83.6
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 1.5e-92 343.2 207 80.7
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 3.4e-92 342.0 207 83.6
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 3.4e-92 342.0 204 87.3
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.4e-92 341.7 207 83.6
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 4.4e-92 341.7 207 83.6
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 5.8e-92 341.3 207 83.6
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 7.6e-92 340.9 207 83.6
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 7.6e-92 340.9 211 82.5
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 9.9e-92 340.5 207 83.6
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 9.9e-92 340.5 200 85.5
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 1.7e-91 339.7 207 82.6
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 3.7e-91 338.6 207 82.6
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 3.7e-91 338.6 206 83.5
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.9e-91 338.2 208 82.7
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 8.3e-91 337.4 200 84.5
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 8.3e-91 337.4 207 82.1
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 1.4e-90 336.7 206 80.6
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.4e-90 336.7 207 82.6
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 2.4e-90 335.9 207 82.1
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 4.1e-90 335.1 206 80.6
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 5.4e-90 334.7 204 82.4
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 7.1e-90 334.3 207 82.1
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 9.2e-90 334.0 207 81.6
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.2e-89 333.6 209 83.3
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.2e-89 333.6 207 81.2
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.6e-89 333.2 204 82.4
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 2.1e-89 332.8 209 82.3
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 2.7e-89 332.4 204 81.9
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 3.5e-89 332.0 204 81.9
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 4.6e-89 331.6 207 81.6
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 1.3e-88 330.1 207 79.7
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 3.0e-88 328.9 204 80.4
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.0e-88 328.9 203 80.8
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 3.9e-88 328.6 207 79.2
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 5.1e-88 328.2 207 79.7
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 8.6e-88 327.4 207 79.7
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 8.6e-88 327.4 204 79.9
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 8.6e-88 327.4 207 80.2
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 3.3e-87 325.5 207 78.7
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 4.7e-86 321.6 210 79.0
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 6.2e-86 321.2 207 77.8
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 8.1e-86 320.9 207 79.2
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 8.1e-86 320.9 283 64.0
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.1e-85 320.5 209 77.5
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.1e-85 318.9 207 78.7
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 6.8e-85 317.8 207 79.7
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 1.2e-84 317.0 208 78.4
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 2.0e-84 316.2 208 78.4
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 2.0e-84 316.2 208 78.4
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 2.0e-84 316.2 204 80.9
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 2.6e-84 315.8 208 78.4
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 2.6e-84 315.8 208 78.4
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 2.6e-84 315.8 207 76.8
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 2.2e-83 312.8 208 77.9
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.2e-83 312.8 192 79.7
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.2e-83 312.8 191 80.6
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 2.2e-83 312.8 207 76.3
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 1.4e-82 310.1 210 75.2
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 9.3e-82 307.4 195 78.5
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 3.9e-80 302.0 207 74.9
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 1.9e-79 299.7 164 91.5
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 4.3e-79 298.5 204 74.0
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 9.6e-79 297.4 191 75.9
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 1.3e-78 297.0 204 73.5
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 1.6e-78 296.6 200 72.5
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 6.2e-78 294.7 204 76.0
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 8.1e-78 294.3 204 73.0
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.8e-77 293.1 192 74.0
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 4.0e-77 292.0 185 79.5
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.3e-75 287.0 174 81.6
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 1.7e-75 286.6 185 81.6
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 2.2e-75 286.2 266 56.8
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 8.7e-72 274.2 173 79.2
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 1.8e-69 266.5 174 77.0
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 1.5e-68 263.5 190 70.5
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 7.1e-66 254.6 208 59.1
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 1.0e-64 250.8 199 63.8
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.8e-64 250.0 216 64.4
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 4.5e-60 235.3 199 57.3
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.3e-59 233.8 145 83.4
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 6.0e-57 224.9 145 80.7
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 1.3e-56 223.8 139 79.9
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 2.1e-54 216.5 199 55.8
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 2.1e-54 216.5 177 67.2
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 4.8e-54 215.3 168 73.2
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.3e-51 207.2 201 57.7
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 3.7e-46 189.1 110 80.9
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 2.4e-45 186.4 125 76.0
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 1.3e-43 180.6 172 57.6
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 4.2e-42 175.6 204 51.0
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 8.8e-40 167.9 162 51.9
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 5.9e-36 155.2 84 97.6
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 8.5e-35 151.4 199 47.2
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 6.1e-33 145.2 91 84.6
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 1.0e-24 117.9 91 70.3
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 1.4e-16 90.9 56 76.8
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 9.8e-15 84.7 56 69.6
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 1.7e-14 84.0 66 69.7
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 7.2e-10 68.6 70 48.6
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 9.4e-10 68.2 34 88.2
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.6e-09 66.2 35 82.9


User provided reference genes

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