Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g011920 Medicago truncatula HOM05D000227 ORTHO05D262379 4.0e-30 134.0 65 100.0
Gohir.A12G220800 Gossypium hirsutum HOM05D000227 ORTHO05D004136 9.7e-08 59.7 81 44.4
MSTRG.27179 Avicennia marina HOM05D000227 ORTHO05D004136 2.2e-07 58.5 81 43.2
Duzib106G0535 Durio zibethinus HOM05D000227 ORTHO05D004136 2.2e-07 58.5 81 43.2
Migut.F00440 Erythranthe guttata HOM05D000227 ORTHO05D004136 2.8e-07 58.2 81 42.0
Nitab4.5_0000262g0200 Nicotiana tabacum HOM05D000227 ORTHO05D004136 2.8e-07 58.2 81 42.0
Psat2g179360 Pisum sativum HOM05D000227 ORTHO05D004136 2.8e-07 58.2 81 43.2
Ca_06692_v3 Cicer arietinum L. HOM05D000227 ORTHO05D004136 3.7e-07 57.8 81 43.2
Gohir.D12G223100 Gossypium hirsutum HOM05D000227 ORTHO05D004136 4.8e-07 57.4 81 43.2
Gorai.008G239400 Gossypium raimondii HOM05D000227 ORTHO05D004136 4.8e-07 57.4 81 43.2
SGA_v2.0_scaffold2G01163 Striga asiatica HOM05D000922 ORTHO05D004136 4.8e-07 57.4 81 44.4
CAN.G152.23 Capsicum annuum HOM05D000227 ORTHO05D004136 6.3e-07 57.0 81 42.0
Solyc03g083520.4 Solanum lycopersicum HOM05D000227 ORTHO05D004136 6.3e-07 57.0 81 42.0
Sopen03g023330 Solanum pennellii HOM05D000227 ORTHO05D004136 6.3e-07 57.0 81 42.0
SGA_v2.0_scaffold486G52385 Striga asiatica HOM05D000922 ORTHO05D001851 6.3e-07 57.0 81 42.0
CSS0026594 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004136 8.2e-07 56.6 81 40.7
Nitab4.5_0003732g0030 Nicotiana tabacum HOM05D000227 ORTHO05D004136 8.2e-07 56.6 81 42.0
Oeu028176.1 Olea europaea HOM05D000227 ORTHO05D004136 8.2e-07 56.6 81 40.7
Peaxi162Scf01372g00023 Petunia axillaris HOM05D000227 ORTHO05D004136 8.2e-07 56.6 81 42.0
SalBow4G1771 Salvia bowleyana HOM05D000227 ORTHO05D004136 8.2e-07 56.6 81 42.0
SalBow4G2666 Salvia bowleyana HOM05D000227 ORTHO05D004136 8.2e-07 56.6 81 42.0
COL.COLO4_23883 Corchorus olitorius HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 42.0
Duzib084G0929 Durio zibethinus HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 42.0
Duzib205G1358 Durio zibethinus HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 42.0
Hma1.2p1_0654F.1_g196440 Hydrangea macrophylla HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 39.5
Lalb_Chr16g0379781 Lupinus albus HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 42.0
Nitab4.5_0000205g0080 Nicotiana tabacum HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 42.0
Nitab4.5_0000205g0140 Nicotiana tabacum HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 42.0
Peaxi162Scf00234g00074 Petunia axillaris HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 40.7
Sed0001382 Sechium edule HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 42.0
Thecc.03G261600 Theobroma cacao HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 42.0
TWI60G1653 Tripterygium wilfordii HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 42.0
TWI81G0057 Tripterygium wilfordii HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 42.0
GSVIVG01004914001 Vitis vinifera HOM05D000227 ORTHO05D004136 1.1e-06 56.2 81 42.0
MELO3C013982.2 Cucumis melo HOM05D000227 ORTHO05D004136 1.4e-06 55.8 81 42.0
CsaV3_3G003160 Cucumis sativus L. HOM05D000227 ORTHO05D004136 1.4e-06 55.8 81 42.0
Dinv28541 Davidia involucrata HOM05D000227 ORTHO05D004136 1.4e-06 55.8 81 42.0
Oeu042581.1 Olea europaea HOM05D000227 ORTHO05D004136 1.4e-06 55.8 81 40.7
MSTRG.8419 Avicennia marina HOM05D000227 ORTHO05D004136 1.8e-06 55.5 81 39.5
CSS0025958 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004136 1.8e-06 55.5 81 39.5
ClCG10G003120 Citrullus lanatus HOM05D000227 ORTHO05D004136 1.8e-06 55.5 81 42.0
DCAR_020203 Daucus carota HOM05D000227 ORTHO05D004136 1.8e-06 55.5 81 40.7
Lj2g0015453 Lotus japonicus HOM05D000227 ORTHO05D004136 1.8e-06 55.5 81 40.7
Oeu021719.1 Olea europaea HOM05D000227 ORTHO05D004136 1.8e-06 55.5 81 39.5
Solyc11g072270.3 Solanum lycopersicum HOM05D000227 ORTHO05D004136 1.8e-06 55.5 81 42.0
Sopen11g029940 Solanum pennellii HOM05D000227 ORTHO05D004136 1.8e-06 55.5 81 42.0
PGSC0003DMG400027382 Solanum tuberosum HOM05D000227 ORTHO05D004136 1.8e-06 55.5 81 42.0
unitig_37.g11934 Utricularia gibba HOM05D000227 ORTHO05D004136 1.8e-06 55.5 81 40.7
CANSAT21G2084 Cannabis sativa HOM05D000227 ORTHO05D004136 2.4e-06 55.1 81 40.7
Dinv22973 Davidia involucrata HOM05D000227 ORTHO05D004136 2.4e-06 55.1 81 40.7
FvH4_5g00650 Fragaria vesca HOM05D000227 ORTHO05D004136 2.4e-06 55.1 81 42.0
FAN08G0403 Fragaria x ananassa HOM05D000227 ORTHO05D004136 2.4e-06 55.1 81 42.0
FAN18G1696 Fragaria x ananassa HOM05D000227 ORTHO05D004136 2.4e-06 55.1 81 42.0
Lsat_1_v5_gn_2_129361 Lactuca sativa HOM05D000227 ORTHO05D004136 2.4e-06 55.1 81 40.7
TPR.G19687 Trifolium pratense HOM05D000227 ORTHO05D004136 2.4e-06 55.1 81 42.0
FAN04G0173 Fragaria x ananassa HOM05D000227 ORTHO05D004136 3.1e-06 54.7 81 42.0
FAN13G2301 Fragaria x ananassa HOM05D000227 ORTHO05D004136 3.1e-06 54.7 81 42.0
Actinidia13559 Actinidia chinensis HOM05D000227 ORTHO05D004136 4.1e-06 54.3 81 39.5
Cc02_g03980 Coffea canephora HOM05D000227 ORTHO05D004136 4.1e-06 54.3 81 40.7
Hma1.2p1_0099F.1_g049010 Hydrangea macrophylla HOM05D000227 ORTHO05D004136 4.1e-06 54.3 81 39.5
PSO478G4245 Papaver somniferum HOM05D000227 ORTHO05D004136 4.1e-06 54.3 81 42.0
PSO782G5533 Papaver somniferum HOM05D000227 ORTHO05D004136 4.1e-06 54.3 81 42.0
unitig_92.g28268 Utricularia gibba HOM05D000227 ORTHO05D004136 4.1e-06 54.3 81 42.0
Actinidia25031 Actinidia chinensis HOM05D000227 ORTHO05D004136 5.3e-06 53.9 81 39.5
HanXRQChr02g0040591 Helianthus annuus HOM05D000227 ORTHO05D004136 5.3e-06 53.9 81 40.7
HanXRQChr14g0461701 Helianthus annuus HOM05D000227 ORTHO05D004136 5.3e-06 53.9 81 39.5
Lalb_Chr05g0214631 Lupinus albus HOM05D000227 ORTHO05D004136 5.3e-06 53.9 81 40.7
MD03G1151100 Malus domestica HOM05D000227 ORTHO05D004136 5.3e-06 53.9 81 40.7
MD04G1079800 Malus domestica HOM05D000227 ORTHO05D004136 5.3e-06 53.9 81 40.7
Manes.02G033700 Manihot esculenta HOM05D000227 ORTHO05D004136 5.3e-06 53.9 81 39.5
Nitab4.5_0000205g0090 Nicotiana tabacum HOM05D000227 ORTHO05D004136 5.3e-06 53.9 81 40.7
Prupe.5G079300 Prunus persica HOM05D000227 ORTHO05D004136 5.3e-06 53.9 81 40.7
Rhsim03G0170800 Rhododendron simsii HOM05D000922 ORTHO05D004136 5.3e-06 53.9 81 40.7
Glyma.11G030100 Glycine max HOM05D000227 ORTHO05D004136 6.9e-06 53.5 81 39.5
Medtr5g011850 Medicago truncatula HOM05D000227 ORTHO05D004136 6.9e-06 53.5 81 40.7
RcHm_v2.0_Chr7g0201611 Rosa chinensis HOM05D000227 ORTHO05D004136 6.9e-06 53.5 81 40.7
Sc13g0007760 Simmondsia chinensis HOM05D000227 ORTHO05D004136 6.9e-06 53.5 81 39.5
TAR636G1788 Trochodendron aralioides HOM05D000227 ORTHO05D004136 6.9e-06 53.5 81 42.0
VMungo0331G1393 Vigna mungo HOM05D000227 ORTHO05D004136 6.9e-06 53.5 81 39.5
Atru.chr9.1429 Acer truncatum HOM05D000227 ORTHO05D004136 9.0e-06 53.1 81 40.7
HanXRQChr08g0223571 Helianthus annuus HOM05D000227 ORTHO05D004136 9.0e-06 53.1 81 39.5
Potri.001G117900 Populus trichocarpa HOM05D000227 ORTHO05D004136 9.0e-06 53.1 81 40.7
Potri.003G115000 Populus trichocarpa HOM05D000227 ORTHO05D004136 9.0e-06 53.1 81 40.7
SHI20488 Sapria himalayana HOM05D000227 ORTHO05D004136 9.0e-06 53.1 81 42.0


User provided reference genes

Program Settings