Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 9.9e-103 376.7 180 100.0
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 3.2e-69 265.4 180 70.0
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.3e-67 259.2 180 72.2
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.5e-66 256.5 181 70.7
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 6.3e-65 251.1 183 68.9
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 6.3e-65 251.1 183 68.9
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 8.2e-65 250.8 180 67.2
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 2.4e-64 249.2 183 68.3
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 7.7e-63 244.2 182 66.5
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.3e-62 243.4 139 79.1
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 2.5e-61 239.2 177 65.0
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 5.5e-61 238.0 180 66.7
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 7.2e-61 237.7 180 66.7
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.7e-60 235.7 177 64.4
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 2.7e-60 235.7 182 64.8
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 3.6e-60 235.3 179 65.9
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.8e-59 233.0 177 63.3
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 6.7e-59 231.1 141 76.6
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 2.0e-58 229.6 176 63.6
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 4.4e-58 228.4 156 67.9
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 5.7e-58 228.0 182 63.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 6.3e-57 224.6 181 61.9
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 6.3e-57 224.6 181 62.4
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.3e-57 224.6 181 61.9
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.3e-57 224.6 181 62.4
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.4e-56 223.4 196 59.2
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 2.4e-56 222.6 196 58.7
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 4.1e-56 221.9 177 61.6
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 6.9e-56 221.1 177 60.5
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.1e-56 220.7 181 61.3
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 9.1e-56 220.7 119 82.4
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.5e-55 219.9 177 61.6
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 3.4e-55 218.8 177 59.9
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 5.9e-55 218.0 177 59.9
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 5.9e-55 218.0 179 60.9
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 5.9e-55 218.0 177 61.0
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 7.7e-55 217.6 179 60.3
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.3e-54 216.9 180 56.1
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.3e-54 216.9 176 58.5
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 2.2e-54 216.1 180 56.1
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 5.0e-54 214.9 178 61.2
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.0e-54 214.9 177 61.0
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.9e-53 213.0 177 56.5
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.9e-53 213.0 177 60.5
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 2.5e-53 212.6 180 56.1
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.4e-53 210.7 176 58.5
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.2e-52 210.3 177 59.9
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.6e-52 209.9 176 58.5
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.6e-52 208.8 177 57.1
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 4.7e-52 208.4 196 55.6
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 4.7e-52 208.4 175 57.7
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.8e-51 206.5 175 56.6
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 3.9e-51 205.3 177 59.3
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.0e-50 203.0 181 53.6
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 2.6e-50 202.6 206 52.4
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 3.3e-50 202.2 173 59.5
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 3.3e-50 202.2 180 57.2
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 7.4e-50 201.1 189 54.0
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.3e-49 200.3 206 51.5
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.3e-49 200.3 145 64.8
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.3e-49 200.3 119 73.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 2.8e-49 199.1 177 57.6
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 3.7e-49 198.7 133 68.4
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 6.3e-49 198.0 168 57.1
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 6.3e-49 198.0 180 58.3
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-48 197.2 178 55.1
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.4e-48 196.8 175 57.1
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.8e-48 196.4 113 76.1
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.8e-48 196.4 179 56.4
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 3.1e-48 195.7 135 63.0
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 7.0e-48 194.5 133 66.2
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.2e-47 193.7 189 52.9
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.6e-47 192.6 179 55.9
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.5e-47 191.8 181 49.7
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 7.7e-47 191.0 177 54.8
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.3e-46 190.3 180 53.3
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.3e-46 190.3 177 55.4
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.3e-46 190.3 177 55.4
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.9e-46 189.1 171 51.5
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.8e-46 188.7 133 65.4
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 5.0e-46 188.3 171 51.5
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 8.5e-46 187.6 161 58.4
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 8.5e-46 187.6 161 58.4
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 8.5e-46 187.6 161 58.4
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 8.5e-46 187.6 161 58.4
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.1e-45 187.2 136 64.7
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 1.5e-45 186.8 132 66.7
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.5e-45 186.8 118 66.1
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 3.2e-45 185.7 165 55.8
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 5.5e-45 184.9 160 56.9
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 7.2e-45 184.5 161 57.8
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 7.2e-45 184.5 161 57.8
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 7.2e-45 184.5 164 58.5
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 9.4e-45 184.1 174 50.0
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.4e-45 184.1 172 52.3
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 1.2e-44 183.7 169 53.3
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.2e-44 183.7 166 53.0
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.6e-44 183.3 161 55.3
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-44 183.3 164 57.3
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 3.6e-44 182.2 175 54.3
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.6e-44 182.2 181 51.4
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.7e-44 181.8 180 52.2
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 8.0e-44 181.0 118 68.6
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 8.0e-44 181.0 137 59.9
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 1.0e-43 180.6 163 55.8
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.0e-43 179.1 161 57.8
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 5.2e-43 178.3 164 56.7
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 5.2e-43 178.3 164 56.7
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 5.2e-43 178.3 164 56.7
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 5.2e-43 178.3 118 67.8
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 8.8e-43 177.6 172 52.3
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.5e-42 176.8 180 51.1
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.7e-41 172.2 117 63.2
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 8.2e-41 171.0 121 60.3
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.1e-40 170.6 118 61.9
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.4e-40 170.2 128 58.6
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 1.8e-40 169.9 177 50.8
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.8e-40 169.9 162 51.9
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.1e-40 168.7 127 59.1
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.3e-40 168.3 139 59.7
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.6e-39 166.8 168 50.0
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 2.0e-39 166.4 116 63.8
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 3.5e-39 165.6 179 49.2
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 4.5e-39 165.2 144 53.5
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 5.9e-39 164.9 139 54.7
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 5.9e-39 164.9 178 48.9
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.9e-39 164.9 121 56.2
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 5.9e-39 164.9 127 57.5
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-38 163.3 118 56.8
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 2.9e-38 162.5 121 61.2
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 3.8e-38 162.2 174 47.1
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 3.8e-38 162.2 161 47.8
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.2e-36 157.1 121 60.3
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 6.8e-35 151.4 120 52.5
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 6.8e-35 151.4 118 57.6
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.5e-34 150.2 173 43.4
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 5.7e-34 148.3 190 42.6
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.5e-34 147.9 113 54.9
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 2.2e-33 146.4 134 50.7
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.8e-33 145.2 123 52.0
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 4.8e-33 145.2 132 50.0
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 3.1e-32 142.5 112 56.2
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.5e-31 138.7 103 55.3
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 4.2e-29 132.1 150 47.3
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.2e-29 131.3 121 49.6
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.6e-28 130.2 109 56.0
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.6e-28 129.0 88 64.8
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 4.7e-28 128.6 100 57.0
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.0e-27 127.5 112 49.1
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.8e-27 126.7 109 56.9
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 4.0e-27 125.6 114 49.1
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.8e-27 124.4 116 51.7
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 5.7e-26 121.7 107 47.7
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.2e-25 119.8 96 58.3
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 1.1e-24 117.5 120 45.0
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 7.0e-24 114.8 124 43.5
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 7.0e-24 114.8 139 42.4
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 8.6e-22 107.8 125 43.2
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 8.6e-22 107.8 125 43.2
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 8.6e-22 107.8 120 41.7
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.1e-21 107.5 114 51.8
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.3e-21 105.5 107 45.8
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.6e-20 102.4 83 53.0
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 4.7e-20 102.1 129 40.3
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.0e-19 100.9 75 61.3
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-19 100.5 72 61.1
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 2.3e-14 83.2 126 38.9
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 3.0e-14 82.8 94 41.5
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.5e-10 70.5 114 41.2
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 5.8e-10 68.6 72 44.4
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.7e-09 67.0 54 59.3
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 9.2e-08 61.2 42 59.5


User provided reference genes

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