Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 1.5e-49 199.1 96 100.0
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 1.6e-19 99.4 88 63.6
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 1.1e-18 96.7 95 58.9
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 3.1e-18 95.1 95 57.9
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 3.4e-17 91.7 87 60.9
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 3.4e-17 91.7 90 58.9
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 4.4e-17 91.3 95 54.7
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 1.3e-16 89.7 95 55.8
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 2.2e-16 89.0 95 53.7
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 2.9e-16 88.6 90 56.7
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 3.7e-16 88.2 95 52.6
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 3.7e-16 88.2 95 53.7
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 5.4e-15 84.3 95 52.6
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 9.2e-15 83.6 95 52.6
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 2.1e-14 82.4 108 45.4
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 1.1e-12 76.6 87 50.6
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 1.1e-12 76.6 88 45.5
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.9e-12 75.9 90 48.9
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 2.5e-12 75.5 94 43.6
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 7.3e-12 73.9 88 48.9
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 7.3e-12 73.9 91 45.1
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 9.6e-12 73.6 86 45.3
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.2e-11 73.2 90 45.6
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 1.2e-11 73.2 89 43.8
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 1.2e-11 73.2 89 43.8
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 1.6e-11 72.8 88 50.0
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.6e-11 72.8 91 46.2
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 2.1e-11 72.4 90 45.6
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 2.8e-11 72.0 95 43.2
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 2.8e-11 72.0 95 43.2
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 2.8e-11 72.0 90 45.6
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 2.8e-11 72.0 94 44.7
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 2.8e-11 72.0 87 46.0
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 2.8e-11 72.0 87 46.0
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 3.6e-11 71.6 88 48.9
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 3.6e-11 71.6 88 44.3
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 4.7e-11 71.2 87 49.4
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 4.7e-11 71.2 87 46.0
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 4.7e-11 71.2 87 46.0
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 4.7e-11 71.2 90 44.4
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 4.7e-11 71.2 90 43.3
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 6.2e-11 70.9 89 43.8
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 6.2e-11 70.9 86 48.8
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 6.2e-11 70.9 87 47.1
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 6.2e-11 70.9 90 42.2
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 6.2e-11 70.9 92 41.3
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 6.2e-11 70.9 90 42.2
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 8.1e-11 70.5 87 43.7
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 8.1e-11 70.5 87 44.8
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 8.1e-11 70.5 88 46.6
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 1.1e-10 70.1 88 45.5
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 1.4e-10 69.7 88 47.7
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.4e-10 69.7 88 44.3
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 1.4e-10 69.7 90 42.2
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 1.4e-10 69.7 90 43.3
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 1.4e-10 69.7 87 43.7
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 1.8e-10 69.3 84 46.4
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 2.4e-10 68.9 87 47.1
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 2.4e-10 68.9 87 48.3
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 3.1e-10 68.6 89 43.8
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 4.0e-10 68.2 93 40.9
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 4.0e-10 68.2 90 43.3
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 5.2e-10 67.8 87 46.0
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 5.2e-10 67.8 87 46.0
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 5.2e-10 67.8 87 46.0
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 5.2e-10 67.8 87 46.0
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 8.9e-10 67.0 87 43.7
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 8.9e-10 67.0 87 43.7
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 8.9e-10 67.0 87 41.4
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 8.9e-10 67.0 87 42.5
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 8.9e-10 67.0 75 45.3
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 2.0e-09 65.9 87 43.7
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 2.0e-09 65.9 87 43.7
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 2.0e-09 65.9 87 43.7
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 3.4e-09 65.1 93 41.9
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 3.4e-09 65.1 84 41.7
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 3.4e-09 65.1 112 36.6
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 3.4e-09 65.1 87 41.4
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 3.4e-09 65.1 88 43.2
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 3.4e-09 65.1 88 43.2
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 3.4e-09 65.1 73 46.6
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 3.4e-09 65.1 84 44.0
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 4.4e-09 64.7 90 40.0
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 4.4e-09 64.7 86 44.2
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 5.8e-09 64.3 84 44.0
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 5.8e-09 64.3 86 44.2
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 5.8e-09 64.3 83 44.6
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 7.6e-09 63.9 84 45.2
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 7.6e-09 63.9 87 41.4
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 9.9e-09 63.5 87 41.4
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 2.2e-08 62.4 87 40.2
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 2.2e-08 62.4 91 39.6
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 6.4e-08 60.8 84 42.9
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 6.4e-08 60.8 73 45.2
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 6.4e-08 60.8 88 40.9
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 1.9e-07 59.3 113 33.6
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 1.9e-07 59.3 87 42.5
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 5.4e-07 57.8 88 37.5
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 7.1e-07 57.4 86 36.0
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 1.2e-06 56.6 57 50.9
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 4.6e-06 54.7 91 34.1


User provided reference genes

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