Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 0.0e+00 1142.1 566 100.0
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 1.0e-294 1016.1 563 88.8
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 7.5e-290 1000.0 574 85.9
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 1.7e-278 962.2 571 80.4
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 2.5e-277 958.4 581 79.3
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 3.6e-276 954.5 574 79.4
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 6.4e-273 943.7 563 80.3
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 9.2e-272 939.9 581 76.9
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 7.3e-269 930.2 570 80.9
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 4.7e-268 927.5 581 79.2
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 1.1e-264 916.4 567 79.0
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 1.4e-259 899.4 486 91.2
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 1.0e-238 830.1 577 70.0
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 1.5e-237 826.2 564 69.5
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 5.6e-237 824.3 566 69.1
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 8.1e-236 820.5 565 68.3
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 3.1e-235 818.5 577 68.1
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 3.1e-235 818.5 565 68.7
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 5.3e-235 817.8 566 68.0
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 6.9e-235 817.4 577 68.1
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 9.0e-235 817.0 578 68.0
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 2.0e-234 815.8 567 69.5
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 2.6e-234 815.5 578 68.0
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 5.8e-234 814.3 566 68.0
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 1.7e-233 812.8 574 67.8
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 2.9e-233 812.0 579 66.3
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 3.8e-233 811.6 570 68.6
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 1.1e-232 810.1 570 67.7
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 1.9e-232 809.3 567 71.8
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 4.2e-232 808.1 566 67.8
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 5.5e-232 807.7 568 68.8
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 5.5e-232 807.7 575 68.3
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 5.1e-230 801.2 568 67.4
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 8.7e-230 800.4 566 68.2
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 1.1e-229 800.0 577 67.2
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 1.5e-229 799.7 576 68.8
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 1.5e-229 799.7 577 65.9
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 1.5e-229 799.7 582 65.8
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 2.5e-229 798.9 563 68.7
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 2.5e-229 798.9 563 68.6
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 2.5e-229 798.9 604 64.6
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 5.7e-229 797.7 563 67.7
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 5.7e-229 797.7 577 65.9
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 7.4e-229 797.3 571 66.5
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 1.3e-228 796.6 562 68.9
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 1.6e-228 796.2 563 68.7
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 1.6e-228 796.2 566 68.6
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 2.1e-228 795.8 566 67.8
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 2.1e-228 795.8 559 69.2
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 3.7e-228 795.0 571 67.3
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 4.8e-228 794.7 569 66.8
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 6.2e-228 794.3 565 68.3
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 1.1e-227 793.5 562 67.4
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 2.4e-227 792.3 562 68.7
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 2.4e-227 792.3 570 66.1
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 1.2e-226 790.0 576 65.3
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 1.5e-226 789.6 567 67.4
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 1.5e-226 789.6 589 66.0
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 2.6e-226 788.9 577 65.0
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 2.6e-226 788.9 564 66.0
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 2.6e-226 788.9 576 65.1
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 4.5e-226 788.1 576 65.8
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 7.6e-226 787.3 576 65.3
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 2.2e-225 785.8 578 65.1
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 8.4e-225 783.9 583 65.2
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 1.4e-224 783.1 539 67.7
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 7.2e-224 780.8 569 65.6
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 2.1e-223 779.2 568 66.0
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 2.7e-223 778.9 576 65.8
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 6.1e-223 777.7 572 65.2
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 6.1e-223 777.7 561 67.4
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 7.9e-223 777.3 570 66.5
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 1.0e-222 776.9 567 65.3
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 1.0e-222 776.9 576 64.4
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 5.7e-221 771.2 562 65.5
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 1.3e-220 770.0 576 63.9
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 1.6e-220 769.6 563 66.1
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 3.4e-218 761.9 570 65.1
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 2.9e-217 758.8 575 64.0
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 2.9e-217 758.8 568 64.8
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 3.2e-216 755.4 613 60.4
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 5.5e-216 754.6 575 64.3
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 1.2e-215 753.4 577 62.6
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 4.6e-215 751.5 570 64.2
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 3.9e-214 748.4 576 63.0
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 6.3e-212 741.1 581 63.2
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 9.1e-211 737.3 572 62.9
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 1.4e-208 729.9 573 62.3
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 1.6e-207 726.5 572 60.8
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 2.1e-207 726.1 573 60.4
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 4.4e-205 718.4 540 63.3
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 2.2e-204 716.1 566 60.4
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 2.5e-200 702.6 570 66.5
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 1.6e-194 683.3 569 59.1
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 2.5e-192 676.0 569 58.9
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 4.0e-190 668.7 577 57.5
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 6.3e-188 661.4 588 56.8
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 1.4e-187 660.2 568 57.7
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 1.0e-185 654.1 554 58.3
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 1.0e-174 617.5 565 54.3
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 1.0e-174 617.5 569 54.3
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 2.6e-173 612.8 562 53.9
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 5.9e-170 601.7 597 52.1
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 3.4e-165 585.9 512 56.6
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 3.4e-165 585.9 561 50.6
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 1.5e-160 570.5 577 53.9
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 3.4e-157 559.3 374 71.9
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 7.6e-141 505.0 570 48.1
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 1.9e-131 473.8 679 40.6
DCAR_023301 Daucus carota HOM05D004869 ORTHO05D005893 8.1e-119 431.8 298 68.8
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 9.3e-107 391.7 362 57.2
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 7.4e-104 382.1 666 36.6
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 1.1e-96 358.2 527 39.1
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 3.7e-87 326.6 257 63.4
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 2.1e-82 310.8 240 62.9
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 2.2e-79 300.8 241 63.5
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 3.1e-78 297.0 313 49.8
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 1.7e-71 274.6 242 57.9
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 4.7e-58 229.9 186 60.8
unitig_26.g10564 Utricularia gibba HOM05D004869 ORTHO05D005893 3.4e-56 223.8 234 48.7
MCO01G771 Micromonas commoda HOM05D004869 ORTHO05D005893 2.3e-49 201.1 349 38.1
RcHm_v2.0_Chr3g0480631 Rosa chinensis HOM05D004869 ORTHO05D005893 6.0e-45 186.4 118 76.3
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 5.1e-36 156.8 174 47.1
RcHm_v2.0_Chr6g0311831 Rosa chinensis HOM05D004869 ORTHO05D005893 1.6e-34 151.8 115 68.7
TPR.G15436 Trifolium pratense HOM05D004869 ORTHO05D005893 1.4e-33 148.7 76 92.1
HanXRQChr01g0024801 Helianthus annuus HOM05D004869 ORTHO05D005893 4.1e-30 137.1 178 42.1
TPR.G25902 Trifolium pratense HOM05D000002 ORTHO05D000001 4.6e-29 133.7 73 80.8
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 5.6e-27 126.7 70 80.0
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 9.9e-24 115.9 212 35.8
SEGI_25692 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 9.9e-24 115.9 109 45.9
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 6.4e-23 113.2 165 42.4
MBI18_g23297_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 2.1e-21 108.2 79 67.1
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 3.5e-21 107.5 177 34.5
MBI18_g46557_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 4.6e-21 107.1 79 67.1
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 6.0e-21 106.7 168 42.9
Lsat_1_v5_gn_4_34540 Lactuca sativa HOM05D004869 ORTHO05D005893 9.9e-16 89.4 197 33.0
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 1.9e-14 85.1 48 83.3
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 4.5e-08 63.9 54 53.7


User provided reference genes

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