Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g104920 Medicago truncatula HOM05D002668 ORTHO05D261791 8.8e-69 263.5 130 100.0
vmacro18416 Vaccinium macrocarpon HOM05D002668 ORTHO05D003295 5.8e-12 74.7 66 62.1
CiPaw.08G131900 Carya illinoinensis HOM05D002668 ORTHO05D003295 1.7e-11 73.2 56 66.1
Ciclev10021295m.g Citrus clementina HOM05D002668 ORTHO05D003295 2.2e-11 72.8 81 53.1
Ah.03g148710 Amaranthus hybridus HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Aqoxy6G02056 Aquilegia oxysepala HOM05D002668 ORTHO05D003295 3.8e-11 72.0 34 94.1
CANSAT01G2746 Cannabis sativa HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Ca_22621_v3 Cicer arietinum L. HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
ClCG01G020270 Citrullus lanatus HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Ciclev10001790m.g Citrus clementina HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
COL.COLO4_21915 Corchorus olitorius HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
MELO3C007899.2 Cucumis melo HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
CsaV3_6G047060 Cucumis sativus L. HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
DCAR_025995 Daucus carota HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Dinv40083 Davidia involucrata HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Duzib147G0985 Durio zibethinus HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Migut.H02167 Erythranthe guttata HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
FvH4_1g11900 Fragaria vesca HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
FAN26G3102 Fragaria x ananassa HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
FAN28G2466 Fragaria x ananassa HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Glyma.14G103000 Glycine max HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Glyma.17G222400 Glycine max HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Gohir.A02G170300 Gossypium hirsutum HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Gohir.D03G009700 Gossypium hirsutum HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Gorai.003G010000 Gossypium raimondii HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Lj4g0016733 Lotus japonicus HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Lalb_Chr02g0154261 Lupinus albus HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
MD02G1132900 Malus domestica HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Phvul.003G288000 Phaseolus vulgaris HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Phvul.011G176500 Phaseolus vulgaris HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Psat4g117480 Pisum sativum HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Prupe.7G167800 Prunus persica HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
QL06p032650 Quercus lobata HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Rhsim08G0033800 Rhododendron simsii HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Sed0013451 Sechium edule HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Hund14042 Selenicereus undatus HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
Thecc.01G019400 Theobroma cacao HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
TWI09G0421 Tripterygium wilfordii HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
TAR381G1416 Trochodendron aralioides HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
HPP92_022113 Vanilla planifolia HOM05D002668 ORTHO05D003295 3.8e-11 72.0 34 94.1
VMungo0647G1740 Vigna mungo HOM05D002668 ORTHO05D003295 3.8e-11 72.0 33 97.0
AL8G45280 Arabidopsis lyrata HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
AT5G66240 Arabidopsis thaliana HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
arahy.Tifrunner.gnm1.ann1.4W5VYJ Arachis hypogaea HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
arahy.Tifrunner.gnm1.ann1.W65EFT Arachis hypogaea HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
arahy.Tifrunner.gnm1.ann1.WY0DQM Arachis hypogaea HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
BcaC03g18424 Brassica carinata HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
A02p44570 Brassica napus HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
BolC2t12555H Brassica oleracea HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
BraA02t09373Z Brassica rapa HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
Carub.0008s2825 Capsella rubella HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
CARHR281480 Cardamine hirsuta HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
Hma1.2p1_0956F.1_g241390 Hydrangea macrophylla HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
Hma1.2p1_2239F.1_g317819 Hydrangea macrophylla HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
Sp2g30450 Schrenkiella parvula HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
Sed0007622 Sechium edule HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
THA.LOC104821325 Tarenaya hassleriana HOM05D002668 ORTHO05D003295 8.4e-11 70.9 33 93.9
Actinidia22982 Actinidia chinensis HOM05D002668 ORTHO05D003295 1.1e-10 70.5 33 93.9
EL10Ac6g15474 Beta vulgaris HOM05D002668 ORTHO05D003295 1.1e-10 70.5 33 93.9
Cpa.g.sc6.245 Carica papaya HOM05D002668 ORTHO05D003295 1.1e-10 70.5 33 93.9
AUR62003374 Chenopodium quinoa HOM05D002668 ORTHO05D003295 1.1e-10 70.5 33 93.9
AUR62029456 Chenopodium quinoa HOM05D002668 ORTHO05D003295 1.1e-10 70.5 33 93.9
Sc16g0002140 Simmondsia chinensis HOM05D002668 ORTHO05D003295 1.1e-10 70.5 33 93.9
BcaB07g29671 Brassica carinata HOM05D002668 ORTHO05D003295 1.4e-10 70.1 33 90.9
Cfa006970 Carpinus fangiana HOM05D002668 ORTHO05D003295 1.4e-10 70.1 33 93.9
Haze_03768 Corylus avellana HOM05D002668 ORTHO05D003295 1.4e-10 70.1 33 93.9
MD15G1245700 Malus domestica HOM05D002668 ORTHO05D003295 2.4e-10 69.3 33 93.9
CDE08G1675 Ceratophyllum demersum HOM05D002668 ORTHO05D003295 3.2e-10 68.9 34 91.2
MBI09_g35803_MAGBIO Magnolia biondii HOM05D002668 ORTHO05D003295 3.2e-10 68.9 33 93.9
MBI09_g45311_MAGBIO Magnolia biondii HOM05D002668 ORTHO05D003295 3.2e-10 68.9 33 93.9
Aa31LG1G14740 Aethionema arabicum HOM05D002668 ORTHO05D003295 4.2e-10 68.6 33 90.9
C02p64990 Brassica napus HOM05D002668 ORTHO05D003295 4.2e-10 68.6 33 90.9
Manes.02G104100 Manihot esculenta HOM05D002668 ORTHO05D003295 4.2e-10 68.6 33 93.9
Medtr8g068320 Medicago truncatula HOM05D002668 ORTHO05D003295 4.2e-10 68.6 32 96.9
TPR.G25772 Trifolium pratense HOM05D002668 ORTHO05D003295 4.2e-10 68.6 32 96.9
GSVIVG01018786001 Vitis vinifera HOM05D002668 ORTHO05D003295 4.2e-10 68.6 33 93.9
ECA238G0564 Erigeron canadensis HOM05D002668 ORTHO05D003295 5.4e-10 68.2 33 93.9
Lsat_1_v5_gn_2_75881 Lactuca sativa HOM05D002668 ORTHO05D003295 5.4e-10 68.2 33 93.9
Nitab4.5_0003271g0020 Nicotiana tabacum HOM05D002668 ORTHO05D003295 5.4e-10 68.2 33 93.9
Nitab4.5_0006286g0030 Nicotiana tabacum HOM05D002668 ORTHO05D003295 5.4e-10 68.2 33 93.9
SalBow3G2189 Salvia bowleyana HOM05D002668 ORTHO05D003295 5.4e-10 68.2 33 93.9
Solyc02g083940.3 Solanum lycopersicum HOM05D002668 ORTHO05D003295 5.4e-10 68.2 33 93.9
Sopen02g028720 Solanum pennellii HOM05D002668 ORTHO05D003295 5.4e-10 68.2 33 93.9
SGA_v2.0_scaffold76G25149 Striga asiatica HOM05D002668 ORTHO05D003295 5.4e-10 68.2 33 93.9
Thhalv10004561m.g Eutrema salsugineum HOM05D002668 ORTHO05D003295 7.1e-10 67.8 33 90.9
HanXRQChr14g0441371 Helianthus annuus HOM05D002668 ORTHO05D003295 7.1e-10 67.8 33 90.9
Atru.chr6.548 Acer truncatum HOM05D002668 ORTHO05D003295 9.3e-10 67.4 33 93.9
Cc07_g10670 Coffea canephora HOM05D002668 ORTHO05D003295 9.3e-10 67.4 33 93.9
Medtr2g087400 Medicago truncatula HOM05D002668 ORTHO05D263513 9.3e-10 67.4 33 90.9
RcHm_v2.0_Chr2g0099491 Rosa chinensis HOM05D002668 ORTHO05D003295 9.3e-10 67.4 33 93.9
Nn1g06294 Nelumbo nucifera HOM05D002668 ORTHO05D003295 1.2e-09 67.0 33 90.9
ATR0481G012 Amborella trichopoda HOM05D002668 ORTHO05D003295 1.6e-09 66.6 32 93.8
Potri.005G114600 Populus trichocarpa HOM05D002668 ORTHO05D003295 1.6e-09 66.6 33 90.9
Sabra05G0093800 Salix brachista HOM05D002668 ORTHO05D003295 1.6e-09 66.6 33 90.9
Eucgr.I02354 Eucalyptus grandis HOM05D002668 ORTHO05D003295 2.7e-09 65.9 33 90.9
PGR119G1345 Punica granatum HOM05D002668 ORTHO05D003295 3.5e-09 65.5 34 85.3
MSTRG.2710 Avicennia marina HOM05D002668 ORTHO05D003295 4.6e-09 65.1 33 90.9
PSO541G5724 Papaver somniferum HOM05D002668 ORTHO05D003295 7.8e-09 64.3 34 85.3
PSO675G2492 Papaver somniferum HOM05D002668 ORTHO05D003295 7.8e-09 64.3 34 85.3
SHI08555 Sapria himalayana HOM05D002668 ORTHO05D003295 1.7e-08 63.2 33 87.9
Zm00001eb072520 Zea mays HOM05D002668 ORTHO05D003295 1.7e-08 63.2 34 82.4
Os07g0589400 Oryza sativa ssp. japonica HOM05D002668 ORTHO05D003295 2.3e-08 62.8 34 82.4
CSS0030764 Camellia sinensis var. sinensis HOM05D002668 ORTHO05D003295 4.3e-07 58.5 36 80.6
SEGI_06316 Sequoiadendron giganteum HOM05D002668 ORTHO05D003295 5.6e-07 58.2 55 56.4
Mapoly0109s0026 Marchantia polymorpha HOM05D002668 ORTHO05D003295 7.3e-07 57.8 32 75.0
Pp3c21_4780 Physcomitrium patens HOM05D002668 ORTHO05D003295 2.8e-06 55.8 32 75.0


User provided reference genes

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