Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g104810 Medicago truncatula HOM05D000399 ORTHO05D010012 2.2e-70 268.9 135 100.0
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 2.1e-25 119.4 88 65.9
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 9.9e-23 110.5 96 61.5
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 2.4e-21 105.9 90 62.2
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 5.8e-15 84.7 96 51.0
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 1.6e-12 76.6 58 62.1
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 3.0e-11 72.4 119 42.9
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 1.1e-10 70.5 118 43.2
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 9.6e-10 67.4 37 67.6
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 2.4e-08 62.8 55 43.6
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 5.3e-08 61.6 38 57.9
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 5.3e-08 61.6 40 60.0
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 1.2e-07 60.5 49 55.1
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 1.2e-07 60.5 38 60.5
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 1.2e-07 60.5 42 59.5
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 2.6e-07 59.3 85 38.8
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 5.8e-07 58.2 32 71.9
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.3e-06 57.0 35 68.6
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.9e-06 55.8 38 57.9
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 2.9e-06 55.8 50 52.0
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.8e-06 55.5 28 75.0
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.8e-06 55.5 28 75.0
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.8e-06 55.5 28 75.0
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 4.9e-06 55.1 42 52.4
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 6.5e-06 54.7 38 57.9
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 6.5e-06 54.7 63 41.3
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 6.5e-06 54.7 114 37.7
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 6.5e-06 54.7 32 65.6
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 6.5e-06 54.7 57 45.6
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 6.5e-06 54.7 45 51.1
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 6.5e-06 54.7 32 65.6
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 6.5e-06 54.7 58 44.8
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 6.5e-06 54.7 35 57.1
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 8.4e-06 54.3 47 46.8
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 8.4e-06 54.3 70 42.9
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 8.4e-06 54.3 48 52.1
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 8.4e-06 54.3 122 28.7


User provided reference genes

Program Settings