Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 0.0e+00 1880.1 972 100.0
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 0.0e+00 1411.7 917 80.0
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 0.0e+00 1397.9 902 81.0
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 0.0e+00 1336.6 907 76.2
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 0.0e+00 1303.5 942 73.0
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 0.0e+00 1290.8 915 74.2
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 0.0e+00 1289.2 938 72.4
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 0.0e+00 1140.6 905 67.7
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 0.0e+00 1128.6 919 66.2
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 0.0e+00 1110.9 959 63.5
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.0e-306 1055.8 966 61.8
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 5.4e-304 1047.7 954 61.6
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.8e-300 1035.4 919 61.9
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.7e-286 989.6 953 58.1
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 8.1e-284 980.7 958 56.7
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 7.6e-282 974.2 964 57.1
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 3.2e-280 968.8 960 56.8
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 7.8e-279 964.1 967 55.7
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 8.1e-276 954.1 958 56.5
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 6.4e-273 944.5 933 57.7
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 6.9e-267 924.5 957 55.1
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 2.0e-266 922.9 920 57.1
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 9.9e-266 920.6 975 54.4
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.2e-264 915.6 965 54.7
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 7.1e-264 914.4 966 54.6
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 4.8e-260 901.7 965 54.2
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 3.1e-259 899.0 960 52.7
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 4.9e-257 891.7 968 53.5
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 3.9e-254 882.1 952 52.3
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 8.7e-254 880.9 1037 51.1
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 1.5e-253 880.2 869 57.8
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 5.7e-253 878.2 966 52.2
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.3e-252 877.1 964 51.6
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 6.2e-252 874.8 557 82.0
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.4e-251 873.6 1021 51.6
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.4e-251 872.8 1021 51.3
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 4.0e-251 872.1 960 52.6
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 4.0e-251 872.1 953 52.0
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 5.3e-251 871.7 962 52.6
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 6.9e-251 871.3 1017 51.4
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.5e-250 870.2 958 52.0
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.7e-249 866.7 973 52.6
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.2e-249 866.3 958 51.9
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.0e-249 865.1 1021 51.0
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 8.4e-249 864.4 959 52.8
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 8.4e-249 864.4 943 54.1
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-247 860.5 955 51.6
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.9e-246 855.5 1044 50.2
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.0e-241 840.9 892 54.6
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 7.2e-240 834.7 858 56.2
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 2.0e-237 826.6 968 50.3
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.8e-230 803.5 966 49.6
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.2e-228 796.6 1002 47.9
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 2.0e-226 790.0 876 53.8
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 7.7e-226 788.1 589 69.3
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 2.7e-223 779.6 619 65.9
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.8e-220 769.6 776 56.8
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 1.3e-217 760.8 856 52.9
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 2.5e-216 756.5 977 47.1
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 5.2e-214 748.8 488 79.1
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 5.5e-208 728.8 908 49.1
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.6e-207 726.1 970 47.1
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 8.8e-206 721.5 1078 43.5
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 2.0e-205 720.3 975 45.8
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 2.8e-204 716.5 979 44.5
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 5.9e-202 708.8 952 45.9
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 5.0e-201 705.7 774 51.9
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.5e-200 704.1 934 47.0
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 7.2e-200 701.8 932 46.1
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 5.2e-198 695.7 949 45.5
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 6.8e-198 695.3 978 44.9
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 2.0e-197 693.7 978 44.8
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 4.4e-197 692.6 1011 43.6
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 6.4e-196 688.7 836 49.6
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.8e-195 687.2 927 45.3
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 5.4e-195 685.6 1001 43.1
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.5e-192 677.6 946 45.2
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 3.3e-192 676.4 962 43.8
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 8.3e-188 661.8 1034 43.7
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 5.4e-187 659.1 807 49.9
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 2.5e-184 650.2 1046 40.3
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 7.3e-184 648.7 956 44.0
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 8.1e-183 645.2 1002 41.0
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 6.8e-182 642.1 948 42.3
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 2.6e-181 640.2 1003 40.9
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.9e-179 634.0 902 43.0
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 1.0e-177 628.2 563 60.7
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 6.8e-174 615.5 924 42.0
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 6.8e-174 615.5 936 42.6
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.3e-172 611.3 895 43.4
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.7e-172 610.9 923 41.0
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 2.4e-171 607.1 921 41.3
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 4.1e-171 606.3 921 41.3
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 7.1e-171 605.5 923 40.6
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.2e-170 604.7 922 41.9
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 3.5e-170 603.2 929 41.3
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 4.6e-170 602.8 922 40.8
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 4.6e-170 602.8 935 41.3
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 2.5e-168 597.0 943 41.8
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 3.3e-168 596.7 934 41.8
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 1.6e-167 594.3 932 41.1
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 4.7e-167 592.8 933 42.4
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 6.2e-167 592.4 963 39.6
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 1.1e-166 591.7 950 40.5
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 4.0e-166 589.7 945 40.3
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 4.4e-165 586.3 948 40.3
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.2e-163 580.1 954 39.6
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 7.8e-162 575.5 591 53.8
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 7.3e-160 568.9 971 40.1
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 3.1e-158 563.5 988 39.4
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.1e-152 545.0 812 43.8
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.1e-142 511.9 921 38.7
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.1e-142 511.9 331 80.7
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 3.9e-137 493.4 372 72.0
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.8e-135 487.3 674 44.8
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.0e-124 452.2 779 38.6
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 1.1e-123 448.7 779 40.2
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 5.5e-123 446.4 258 87.2
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.3e-119 435.3 383 60.1
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 1.4e-118 431.8 806 37.0
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 2.4e-118 431.0 784 37.2
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 9.1e-118 429.1 1025 32.1
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 9.1e-118 429.1 777 39.0
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.7e-116 424.9 543 45.9
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 5.5e-115 419.9 522 46.0
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 1.2e-114 418.7 839 36.2
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 6.7e-113 412.9 1013 32.2
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 9.1e-110 402.5 444 52.7
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 1.6e-109 401.7 804 35.9
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 2.9e-108 397.5 525 46.9
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.9e-107 394.8 1018 31.2
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 6.5e-100 369.8 559 40.1
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-92 344.7 1071 28.4
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 6.5e-92 343.2 1021 29.2
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.5e-91 342.0 542 39.9
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 2.1e-82 311.6 366 51.1
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 2.8e-82 311.2 364 50.8
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.5e-80 305.4 609 37.9
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 8.6e-76 289.7 286 55.2
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.6e-75 287.0 211 75.8
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.4e-70 271.6 268 57.1
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.5e-67 261.5 683 32.1
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 1.3e-63 249.2 344 45.6
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.0e-60 239.6 240 50.8
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 5.8e-56 223.8 476 35.9
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 6.2e-50 203.8 374 39.6
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 8.9e-49 199.9 184 57.6
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.1e-43 183.0 317 40.4
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.4e-41 175.3 339 35.7
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-40 172.9 229 47.6
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.6e-37 162.5 203 45.8
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 6.7e-36 157.1 147 65.3
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 4.0e-33 147.9 152 52.0
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 5.3e-33 147.5 163 48.5
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 5.8e-32 144.1 269 46.5
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 5.8e-32 144.1 397 31.7
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 2.4e-30 138.7 218 42.7
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 5.5e-30 137.5 81 86.4
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-29 136.3 562 25.8
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 4.6e-29 134.4 144 50.7
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.3e-28 132.9 188 43.6
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.9e-27 129.0 110 58.2
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 9.6e-27 126.7 101 67.3
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 5.5e-22 110.9 178 38.2
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.3e-20 105.5 289 31.5
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 7.4e-19 100.5 91 58.2
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 6.9e-17 94.0 87 54.0
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 5.9e-16 90.9 134 38.8
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 7.6e-16 90.5 131 41.2
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 8.5e-15 87.0 155 36.8
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 8.5e-15 87.0 117 47.9
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.1e-14 86.7 84 46.4
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 2.7e-13 82.0 97 42.3
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 4.6e-13 81.3 164 38.4
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.3e-12 79.7 72 52.8
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 1.1e-11 76.6 163 37.4
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 1.5e-11 76.3 75 49.3
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 8.2e-10 70.5 79 45.6
HanXRQChr01g0002901 Helianthus annuus HOM05D003625 ORTHO05D004382 2.6e-08 65.5 101 39.6
Hma1.2p1_3245F.1_g334340 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.1e-06 60.1 69 52.2


User provided reference genes

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