Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g032010 Medicago truncatula HOM05D002263 ORTHO05D258597 1.0e-69 266.5 131 100.0
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 2.9e-11 72.4 180 30.6
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 2.7e-09 65.9 48 60.4
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 4.6e-09 65.1 113 33.6
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 6.1e-09 64.7 48 60.4
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 7.9e-09 64.3 113 34.5
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 7.9e-09 64.3 48 62.5
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 7.9e-09 64.3 48 60.4
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 1.8e-08 63.2 97 41.2
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 1.8e-08 63.2 48 54.2
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.8e-08 63.2 52 59.6
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 1.8e-08 63.2 48 58.3
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 1.8e-08 63.2 50 56.0
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 2.3e-08 62.8 113 32.7
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 2.3e-08 62.8 52 57.7
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 2.3e-08 62.8 122 34.4
Actinidia31076 Actinidia chinensis HOM05D002263 ORTHO05D003537 3.0e-08 62.4 48 58.3
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 3.0e-08 62.4 48 60.4
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 3.0e-08 62.4 59 45.8
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 3.0e-08 62.4 48 58.3
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 3.9e-08 62.0 113 32.7
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 3.9e-08 62.0 48 58.3
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 3.9e-08 62.0 52 59.6
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 5.1e-08 61.6 64 51.6
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 5.1e-08 61.6 48 58.3
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 6.7e-08 61.2 48 58.3
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 6.7e-08 61.2 48 56.2
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 6.7e-08 61.2 59 52.5
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 6.7e-08 61.2 48 58.3
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 6.7e-08 61.2 59 49.2
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 6.7e-08 61.2 74 44.6
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 6.7e-08 61.2 48 58.3
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 6.7e-08 61.2 48 58.3
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 6.7e-08 61.2 52 57.7
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 8.7e-08 60.8 48 56.2
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 8.7e-08 60.8 48 56.2
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 8.7e-08 60.8 59 50.8
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 8.7e-08 60.8 48 56.2
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 8.7e-08 60.8 48 58.3
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.1e-07 60.5 48 56.2
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.1e-07 60.5 48 56.2
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 1.1e-07 60.5 48 56.2
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 1.1e-07 60.5 48 56.2
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.1e-07 60.5 48 56.2
Hma1.2p1_2160F.1_g315570 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 1.1e-07 60.5 48 56.2
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 1.1e-07 60.5 52 55.8
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 1.1e-07 60.5 95 40.0
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 1.5e-07 60.1 48 54.2
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 1.5e-07 60.1 48 54.2
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.5e-07 60.1 48 58.3
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 1.5e-07 60.1 48 58.3
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 1.5e-07 60.1 48 58.3
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 1.5e-07 60.1 48 54.2
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 1.5e-07 60.1 48 54.2
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 1.5e-07 60.1 48 52.1
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 1.5e-07 60.1 47 59.6
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 1.9e-07 59.7 48 56.2
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.9e-07 59.7 48 56.2
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 1.9e-07 59.7 48 54.2
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-07 59.7 48 54.2
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-07 59.7 48 54.2
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-07 59.7 48 54.2
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.9e-07 59.7 48 56.2
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 1.9e-07 59.7 48 58.3
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 1.9e-07 59.7 48 58.3
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 2.5e-07 59.3 48 56.2
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 2.5e-07 59.3 48 54.2
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 2.5e-07 59.3 83 42.2
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 2.5e-07 59.3 59 49.2
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 3.3e-07 58.9 48 56.2
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 3.3e-07 58.9 48 54.2
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 3.3e-07 58.9 48 56.2
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 3.3e-07 58.9 48 56.2
Sed0003769 Sechium edule HOM05D002263 ORTHO05D003537 3.3e-07 58.9 48 58.3
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 4.3e-07 58.5 58 51.7
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 4.3e-07 58.5 48 52.1
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 4.3e-07 58.5 62 50.0
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 4.3e-07 58.5 48 54.2
QL10p065355 Quercus lobata HOM05D002263 ORTHO05D029945 4.3e-07 58.5 48 56.2
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 5.7e-07 58.2 48 56.2
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 5.7e-07 58.2 48 56.2
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 5.7e-07 58.2 48 54.2
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 5.7e-07 58.2 48 56.2
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 7.4e-07 57.8 48 54.2
AL8G14170 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 9.7e-07 57.4 48 56.2
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 9.7e-07 57.4 48 54.2
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 9.7e-07 57.4 48 54.2
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 9.7e-07 57.4 48 54.2
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 1.3e-06 57.0 48 54.2
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.3e-06 57.0 48 54.2
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 1.3e-06 57.0 48 54.2
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 1.3e-06 57.0 48 54.2
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 1.6e-06 56.6 48 50.0
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.6e-06 56.6 57 50.9
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.6e-06 56.6 57 50.9
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 2.2e-06 56.2 48 54.2
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.2e-06 56.2 59 45.8
SEGI_10251 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 2.2e-06 56.2 62 43.5
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 2.8e-06 55.8 48 54.2
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 2.8e-06 55.8 86 45.3
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.8e-06 55.8 49 51.0
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.8e-06 55.8 49 51.0
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 2.8e-06 55.8 52 53.8
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 3.7e-06 55.5 86 44.2
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 3.7e-06 55.5 48 52.1
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 3.7e-06 55.5 48 54.2
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 3.7e-06 55.5 48 52.1
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 4.8e-06 55.1 48 52.1
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 4.8e-06 55.1 48 47.9
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 6.3e-06 54.7 47 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 6.3e-06 54.7 48 54.2
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 6.3e-06 54.7 48 52.1
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 6.3e-06 54.7 59 44.1
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 6.3e-06 54.7 97 38.1
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 8.2e-06 54.3 88 44.3
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 8.2e-06 54.3 86 44.2


User provided reference genes

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