Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 4.0e-309 1063.9 533 100.0
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.5e-252 875.9 536 80.4
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.1e-229 800.0 533 75.0
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.2e-207 726.9 538 67.1
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 3.6e-201 705.3 538 65.4
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 4.9e-198 694.9 540 65.6
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 1.1e-194 683.7 534 63.7
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 4.0e-192 675.2 534 63.3
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 2.0e-191 672.9 534 63.7
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.3e-161 573.9 536 57.3
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 7.6e-159 564.7 540 53.5
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.9e-154 550.1 534 54.1
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 1.6e-153 547.0 536 52.6
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 6.2e-153 545.0 534 53.4
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.8e-152 543.5 546 52.2
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.4e-152 543.1 539 54.2
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 5.3e-152 542.0 539 53.8
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.6e-151 539.7 544 50.4
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 5.8e-151 538.5 535 52.1
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 9.9e-151 537.7 547 51.7
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 3.8e-150 535.8 534 53.2
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 7.1e-149 531.6 536 56.0
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 9.3e-149 531.2 536 52.2
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 3.5e-148 529.3 539 50.6
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 6.0e-148 528.5 541 52.1
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 6.0e-148 528.5 539 49.9
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.5e-146 523.1 534 50.7
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.3e-146 522.7 536 51.3
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.4e-146 521.5 531 50.7
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 1.6e-145 520.4 535 51.6
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.1e-145 520.0 539 51.6
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 2.4e-144 516.5 537 49.9
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 2.4e-144 516.5 542 49.1
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.0e-143 513.5 542 50.6
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 3.8e-142 509.2 539 49.9
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.5e-141 506.5 541 49.5
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.2e-141 505.8 528 50.2
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 9.3e-141 504.6 546 49.1
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.7e-140 503.1 528 49.8
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 2.7e-140 503.1 544 50.2
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 3.5e-140 502.7 534 49.6
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 3.0e-139 499.6 529 50.1
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 5.1e-139 498.8 535 48.8
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 5.1e-139 498.8 544 49.8
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 5.1e-139 498.8 548 48.7
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 5.7e-138 495.4 532 49.6
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 4.8e-137 492.3 540 48.7
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 8.2e-137 491.5 535 48.6
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.4e-136 490.7 532 48.7
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.4e-136 490.7 532 48.7
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 9.0e-136 488.0 536 47.9
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 2.2e-134 483.4 533 47.7
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 2.9e-134 483.0 537 48.4
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 8.4e-134 481.5 546 47.3
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 3.2e-133 479.6 533 47.3
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.1e-132 476.9 540 48.1
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 3.5e-132 476.1 533 46.9
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.0e-131 474.6 549 46.8
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 2.3e-131 473.4 534 47.8
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 6.7e-131 471.9 535 47.3
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 8.7e-131 471.5 538 48.9
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.9e-130 470.3 538 45.5
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 3.3e-130 469.5 537 47.5
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.4e-128 463.4 532 46.6
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.3e-128 462.2 540 47.2
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 2.0e-127 460.3 447 54.1
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 4.5e-127 459.1 556 45.3
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 3.2e-125 453.0 534 46.4
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 4.2e-125 452.6 544 47.1
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.2e-124 451.1 534 46.4
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 1.8e-123 447.2 533 45.2
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 6.7e-123 445.3 543 44.9
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 2.0e-122 443.7 539 44.5
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 7.4e-122 441.8 542 45.6
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 9.7e-122 441.4 542 45.2
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.7e-121 440.7 542 46.3
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 4.8e-121 439.1 557 44.3
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 6.9e-120 435.3 553 45.6
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 3.4e-119 433.0 552 45.3
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.1e-117 427.9 455 50.5
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.6e-116 424.1 547 43.5
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 2.7e-116 423.3 533 43.7
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 3.6e-116 422.9 533 43.7
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 7.9e-116 421.8 531 44.4
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 3.9e-115 419.5 537 43.8
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 4.4e-114 416.0 530 44.5
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 4.4e-114 416.0 532 44.2
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 2.0e-111 407.1 537 43.6
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 2.6e-111 406.8 557 40.9
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 1.6e-108 397.5 528 41.5
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 2.1e-108 397.1 527 41.7
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 2.1e-108 397.1 527 41.7
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 2.1e-108 397.1 527 41.7
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 3.6e-108 396.4 528 41.9
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.8e-107 394.0 529 42.5
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.5e-106 391.0 540 41.1
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.4e-99 367.9 426 46.9
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.3e-97 361.3 597 38.7
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.6e-95 354.4 531 39.5
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 2.2e-94 350.5 535 40.0
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 6.5e-94 349.0 519 39.5
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 7.2e-93 345.5 429 43.6
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 5.5e-85 319.3 580 36.7
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 6.1e-84 315.8 207 77.8
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 9.8e-82 308.5 489 38.7
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-79 301.6 285 53.0
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 4.6e-79 299.7 546 37.7
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 8.6e-78 295.4 329 48.3
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.7e-76 289.7 506 35.0
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 6.2e-76 289.3 305 47.2
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 3.9e-70 270.0 622 31.4
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 7.3e-69 265.8 414 40.3
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 4.7e-68 263.1 282 47.2
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.3e-61 240.4 231 49.8
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 1.4e-59 235.0 329 42.9
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 9.2e-56 222.2 555 31.7
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.3e-49 201.8 571 30.8
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 6.2e-44 183.0 390 30.8
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 8.1e-44 182.6 198 43.4
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 6.9e-43 179.5 567 27.7
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 2.5e-37 161.0 305 33.8
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 9.0e-35 152.5 537 26.4
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 4.3e-29 133.7 315 30.5
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 3.9e-22 110.5 128 47.7
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-21 109.0 103 47.6
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 1.3e-17 95.5 293 27.3
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 4.2e-16 90.5 105 43.8
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 1.6e-15 88.6 62 64.5
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 1.0e-14 85.9 228 32.0
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 3.0e-14 84.3 196 31.1
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.0e-14 84.3 128 38.3
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.5e-13 81.3 98 43.9
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.2e-12 78.2 69 55.1
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.2e-12 78.2 132 36.4
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.2e-12 76.3 188 29.3
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.4e-11 75.5 188 29.3
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 3.4e-10 70.9 158 30.4
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 7.2e-08 63.2 54 55.6
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 9.4e-08 62.8 85 35.3
FAN14G1453 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.0e-06 59.3 49 59.2
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.8e-06 58.5 76 50.0
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 2.3e-06 58.2 181 22.7
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 5.1e-06 57.0 65 40.0


User provided reference genes

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