Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g013180 Medicago truncatula HOM05D003523 ORTHO05D004493 1.3e-257 892.5 440 100.0
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 1.2e-181 640.2 475 68.2
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 9.3e-179 630.6 471 68.6
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 1.2e-173 613.6 475 66.3
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 1.7e-172 609.8 475 65.7
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 7.1e-171 604.4 470 65.7
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 9.3e-171 604.0 478 65.5
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 3.5e-170 602.1 473 65.1
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 1.8e-169 599.7 479 64.9
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 8.7e-169 597.4 472 65.7
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 2.5e-168 595.9 473 64.3
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 2.5e-168 595.9 476 64.7
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 3.3e-168 595.5 446 70.6
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 5.6e-168 594.7 478 64.6
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 9.6e-168 594.0 475 65.1
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 1.3e-167 593.6 473 64.3
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 1.6e-167 593.2 473 64.7
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 2.8e-167 592.4 478 64.6
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 3.7e-167 592.0 473 63.8
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 6.9e-166 587.8 475 64.6
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 9.0e-166 587.4 478 63.8
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 1.2e-165 587.0 475 63.4
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 3.4e-165 585.5 475 63.2
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 4.5e-165 585.1 473 64.3
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 5.8e-165 584.7 478 64.6
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 4.9e-164 581.6 478 64.2
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 8.4e-164 580.9 475 63.8
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 2.5e-163 579.3 473 63.0
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 2.5e-163 579.3 478 63.0
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 7.1e-163 577.8 478 64.2
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 1.2e-162 577.0 478 62.8
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 1.6e-162 576.6 470 63.6
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 2.1e-162 576.2 472 63.8
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 4.6e-162 575.1 478 62.6
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 7.9e-162 574.3 478 63.2
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 1.0e-161 573.9 426 71.1
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 1.0e-161 573.9 473 63.4
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 3.0e-161 572.4 478 62.8
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 3.9e-161 572.0 477 62.7
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 3.9e-161 572.0 477 62.5
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 5.1e-161 571.6 478 62.1
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 6.7e-161 571.2 477 63.1
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 1.1e-160 570.5 479 61.6
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 1.5e-160 570.1 478 63.8
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 3.3e-160 568.9 479 62.0
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 5.7e-160 568.2 472 62.7
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 2.8e-159 565.8 488 61.7
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 6.3e-159 564.7 478 62.3
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 6.3e-159 564.7 479 61.8
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 1.8e-158 563.1 477 62.3
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 2.4e-158 562.8 477 62.3
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 4.1e-158 562.0 478 61.9
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 5.3e-158 561.6 490 61.6
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 1.5e-157 560.1 462 62.1
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 1.5e-157 560.1 462 62.1
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 7.7e-157 557.8 465 62.8
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 5.0e-156 555.1 462 61.7
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 6.5e-156 554.7 474 60.8
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 8.5e-156 554.3 471 61.4
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 7.2e-155 551.2 453 62.3
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 1.6e-154 550.1 478 60.7
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 1.6e-154 550.1 480 60.4
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 2.7e-154 549.3 478 60.7
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 3.6e-154 548.9 464 61.9
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 3.6e-154 548.9 465 61.5
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 2.3e-153 546.2 484 59.5
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 2.3e-153 546.2 474 61.8
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 3.9e-153 545.4 474 61.6
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 8.8e-153 544.3 462 60.8
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 2.5e-152 542.7 491 58.9
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 2.5e-152 542.7 482 59.1
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 3.7e-151 538.9 543 55.8
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 1.1e-150 537.3 475 58.9
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 1.8e-150 536.6 476 61.1
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 3.1e-150 535.8 474 60.5
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 4.1e-150 535.4 485 58.4
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 5.3e-150 535.0 478 59.4
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 5.3e-150 535.0 482 59.5
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 5.3e-150 535.0 477 58.9
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 4.5e-149 531.9 470 59.4
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 1.7e-148 530.0 479 59.9
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 2.2e-148 529.6 476 59.2
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 3.8e-148 528.9 469 60.1
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 1.1e-147 527.3 526 55.3
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 1.4e-147 526.9 483 57.8
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 1.4e-147 526.9 476 59.0
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 1.5e-144 516.9 486 57.8
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 3.3e-144 515.8 472 59.1
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 1.3e-143 513.8 466 59.0
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 1.8e-142 510.0 479 57.2
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 4.1e-142 508.8 479 57.2
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 4.1e-142 508.8 479 57.2
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 5.3e-142 508.4 480 57.1
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 7.0e-142 508.1 471 57.5
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 7.7e-141 504.6 467 58.7
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 1.0e-140 504.2 478 59.2
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 1.7e-140 503.4 477 56.4
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 2.9e-140 502.7 468 57.9
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 5.0e-140 501.9 491 56.0
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 5.0e-140 501.9 491 56.0
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 6.5e-140 501.5 470 57.2
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 1.1e-139 500.7 474 57.4
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 1.9e-139 500.0 477 57.0
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 1.9e-139 500.0 477 58.5
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 4.2e-139 498.8 476 57.4
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 6.1e-138 495.0 429 63.2
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 8.0e-138 494.6 496 56.7
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 1.8e-137 493.4 477 57.2
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 5.2e-137 491.9 482 55.4
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 1.5e-136 490.3 432 60.4
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 9.7e-136 487.6 480 54.6
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 8.2e-135 484.6 483 56.1
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 5.3e-134 481.9 477 55.6
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 3.2e-131 472.6 482 53.7
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 2.7e-130 469.5 475 54.1
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 6.3e-127 458.4 442 57.5
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 1.2e-120 437.6 424 58.0
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 1.7e-108 397.1 457 51.4
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 1.7e-103 380.6 302 68.2
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 7.8e-93 345.1 457 45.5
Lsat_1_v5_gn_7_19601 Lactuca sativa HOM05D003523 ORTHO05D004493 5.1e-92 342.4 355 56.9
TPR.G12099 Trifolium pratense HOM05D003523 ORTHO05D004493 5.6e-91 339.0 234 68.8
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 9.5e-91 338.2 479 43.2
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 1.0e-84 318.2 486 40.5
CAN.G1164.7 Capsicum annuum HOM05D003523 ORTHO05D004493 2.5e-83 313.5 233 65.2
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 5.4e-78 295.8 277 59.6
Lsat_1_v5_gn_7_19581 Lactuca sativa HOM05D003523 ORTHO05D004493 1.5e-72 277.7 232 60.3
SEGI_30667 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 3.0e-68 263.5 240 55.0
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 9.9e-64 248.4 226 61.1
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 9.3e-62 241.9 231 58.4
Glyma.15G072332 Glycine max HOM05D003523 ORTHO05D004493 7.9e-61 238.8 175 63.4
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 1.8e-57 227.6 313 42.5
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 3.9e-52 209.9 239 46.4
SEGI_03870 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 3.3e-51 206.8 258 48.4
SHI01796 Sapria himalayana HOM05D003523 ORTHO05D004493 5.7e-51 206.1 204 52.0
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 3.3e-43 180.3 482 32.4
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 6.3e-42 176.0 246 45.9
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 1.5e-40 171.4 241 45.6
Medtr2g013150 Medicago truncatula HOM05D003523 ORTHO05D004493 2.0e-35 154.5 153 56.2
Psat1g020360 Pisum sativum HOM05D003523 ORTHO05D014542 7.4e-27 125.9 100 64.0
Medtr5g040120 Medicago truncatula HOM05D003523 ORTHO05D004493 6.1e-21 106.3 92 60.9
Medtr7g039500 Medicago truncatula HOM05D003523 ORTHO05D004493 2.0e-19 101.3 91 59.3
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 2.6e-19 100.9 108 50.9
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 9.7e-19 99.0 104 53.8
Psat0s3229g0080 Pisum sativum HOM05D003523 ORTHO05D004493 1.0e-15 89.0 49 81.6
COL.COLO4_06328 Corchorus olitorius HOM05D003523 ORTHO05D004493 1.1e-14 85.5 70 70.0
Psat0s4489g0120 Pisum sativum HOM05D003523 ORTHO05D004493 1.3e-10 72.0 64 57.8
Psat5g090280 Pisum sativum HOM05D003523 ORTHO05D327235 3.1e-09 67.4 71 56.3


User provided reference genes

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