Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 2.5e-220 768.5 379 100.0
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 7.4e-201 703.7 379 92.1
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 1.9e-196 689.1 382 90.1
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 4.2e-188 661.4 372 87.4
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 1.1e-183 646.7 374 85.6
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 4.2e-180 634.8 380 82.6
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 6.6e-173 610.9 372 83.1
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 9.8e-169 597.0 381 78.5
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 9.2e-167 590.5 379 78.1
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 2.3e-165 585.9 318 89.9
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 2.8e-155 552.4 355 77.5
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 1.7e-152 543.1 377 73.2
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 4.1e-151 538.5 381 71.9
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 4.6e-150 535.0 381 71.4
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 1.2e-147 526.9 378 71.2
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 2.4e-146 522.7 377 69.2
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 3.8e-144 515.4 376 69.7
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 8.4e-144 514.2 381 69.0
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 1.4e-143 513.5 375 70.7
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.9e-143 513.1 376 69.4
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 2.4e-143 512.7 381 67.2
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 7.1e-143 511.1 379 67.3
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 1.6e-142 510.0 373 68.1
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 2.7e-142 509.2 373 68.1
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 3.5e-142 508.8 373 67.8
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 1.0e-141 507.3 382 67.5
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 1.7e-141 506.5 384 66.7
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 6.6e-141 504.6 377 67.6
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 8.6e-141 504.2 372 68.5
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 1.1e-140 503.8 377 67.1
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 2.5e-140 502.7 376 67.0
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 4.3e-140 501.9 379 67.5
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 5.6e-140 501.5 377 67.4
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 7.3e-140 501.1 377 67.9
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 7.3e-140 501.1 374 67.4
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.6e-139 500.0 372 66.7
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 1.4e-138 496.9 371 68.2
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 2.4e-138 496.1 289 85.1
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 6.9e-138 494.6 375 67.2
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 9.0e-138 494.2 372 68.3
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 4.4e-137 491.9 375 66.7
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 5.8e-137 491.5 360 66.9
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 7.6e-137 491.1 375 66.4
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 7.6e-137 491.1 374 66.3
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 9.9e-137 490.7 372 67.7
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 9.9e-137 490.7 372 67.7
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.3e-136 490.3 377 66.8
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 6.4e-136 488.0 376 65.2
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 6.4e-136 488.0 376 65.4
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 1.1e-135 487.3 381 66.4
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 1.1e-135 487.3 361 67.0
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 1.9e-135 486.5 373 66.2
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 3.2e-135 485.7 370 66.8
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 4.2e-135 485.3 375 65.9
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 7.1e-135 484.6 375 66.1
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 5.6e-132 474.9 382 63.6
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 1.3e-131 473.8 378 64.6
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 1.6e-131 473.4 372 65.3
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.8e-131 472.6 384 63.5
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 4.0e-130 468.8 377 63.9
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 9.0e-130 467.6 373 63.8
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 1.2e-129 467.2 377 63.4
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.6e-129 466.1 370 64.6
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 5.8e-129 464.9 408 60.3
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 9.9e-129 464.2 359 66.3
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 2.9e-128 462.6 385 61.3
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 1.2e-126 457.2 381 61.9
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 5.6e-124 448.4 379 61.7
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 2.8e-123 446.0 381 58.8
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 1.5e-121 440.3 339 67.3
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 5.8e-121 438.3 378 60.6
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 2.9e-120 436.0 361 62.3
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.4e-119 433.7 376 59.0
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 1.9e-116 423.3 378 60.3
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 9.6e-116 421.0 329 66.9
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 3.7e-115 419.1 336 64.9
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 1.7e-112 410.2 369 59.1
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 7.9e-110 401.4 363 59.5
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 3.3e-108 396.0 319 63.9
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 5.7e-108 395.2 294 66.7
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 3.1e-106 389.4 454 48.2
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 2.5e-103 379.8 376 54.0
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 9.7e-100 367.9 460 47.0
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 3.1e-98 362.8 338 55.6
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 3.1e-90 336.3 382 51.3
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.4e-87 327.4 374 52.1
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 1.9e-87 327.0 316 55.4
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 1.5e-84 317.4 283 60.1
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 2.0e-84 317.0 543 40.0
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.8e-75 286.6 372 47.0
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 3.7e-75 286.2 195 73.3
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 1.2e-73 281.2 186 72.6
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 7.7e-73 278.5 278 54.3
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 3.8e-72 276.2 167 77.8
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 5.0e-72 275.8 281 55.9
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.0e-69 266.5 264 55.7
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 1.7e-67 260.8 417 38.6
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 8.3e-67 258.5 244 57.4
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 5.9e-65 252.3 389 40.4
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 6.5e-64 248.8 153 77.1
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 2.5e-63 246.9 293 49.8
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.8e-61 240.7 348 44.0
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 2.0e-60 237.3 255 52.5
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 2.0e-57 227.3 266 48.9
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 1.6e-54 217.6 214 53.7
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 2.2e-43 180.6 111 75.7
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 3.7e-43 179.9 404 35.9
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.1e-42 178.3 121 73.6
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 1.6e-41 174.5 404 32.2
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 9.5e-31 138.7 303 34.3
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.2e-30 138.3 141 51.1
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 2.8e-30 137.1 70 97.1
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 1.8e-29 134.4 174 42.0
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 8.9e-29 132.1 85 71.8
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 1.3e-27 128.3 84 70.2
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.9e-27 127.1 80 75.0
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.4e-26 124.0 80 73.8
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.6e-25 119.8 80 71.2
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 2.1e-17 94.4 58 75.9
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.6e-14 84.7 53 71.7
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 2.1e-14 84.3 52 75.0
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 6.9e-13 79.3 63 58.7
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.6e-12 77.4 52 67.3
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 2.6e-12 77.4 53 64.2
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.3e-08 64.3 43 72.1
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 1.1e-07 62.0 80 42.5
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 2.5e-07 60.8 28 92.9
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 2.1e-06 57.8 53 56.6


User provided reference genes

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