Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.0e-181 639.0 332 100.0
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 9.6e-144 513.8 330 82.1
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 4.2e-139 498.4 336 80.1
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 1.4e-131 473.4 329 76.3
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 7.9e-130 467.6 335 74.9
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 3.9e-129 465.3 335 73.7
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.5e-128 463.4 329 74.8
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 2.8e-127 459.1 335 72.8
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 1.1e-126 457.2 327 74.6
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.8e-126 456.4 326 74.5
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 2.1e-122 443.0 334 70.4
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.0e-121 440.7 329 70.8
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 4.8e-119 431.8 321 70.7
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 5.8e-117 424.9 301 74.1
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.0e-116 424.1 326 67.8
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.3e-116 423.7 334 67.7
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.2e-116 422.9 326 67.8
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.5e-116 421.4 327 66.4
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.1e-115 420.6 326 67.5
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.4e-115 420.2 334 65.9
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 1.9e-115 419.9 307 70.7
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.2e-115 419.1 315 68.9
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 9.3e-115 417.5 324 67.0
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.2e-114 417.2 324 67.0
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.2e-114 417.2 324 67.0
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 2.1e-114 416.4 328 65.9
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 2.1e-114 416.4 324 67.0
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.7e-114 416.0 315 68.3
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 6.0e-114 414.8 316 69.0
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 6.0e-114 414.8 324 66.7
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 6.0e-114 414.8 318 67.0
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 1.0e-113 414.1 333 66.4
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.0e-113 414.1 332 65.1
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 1.0e-113 414.1 327 65.4
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.3e-113 413.7 338 65.4
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.3e-113 412.9 318 67.3
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 3.0e-113 412.5 327 65.1
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 5.1e-113 411.8 321 69.2
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 6.7e-113 411.4 327 64.8
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 8.7e-113 411.0 326 66.6
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.1e-112 410.6 329 66.9
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 1.5e-112 410.2 331 66.2
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.9e-112 409.8 314 66.6
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 2.5e-112 409.5 320 69.1
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.3e-112 409.1 304 69.4
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 9.7e-112 407.5 322 66.8
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 2.8e-111 406.0 330 64.8
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 2.6e-109 399.4 333 64.3
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 3.4e-109 399.1 313 66.8
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 4.5e-109 398.7 314 66.2
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 5.9e-109 398.3 315 65.4
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 1.0e-108 397.5 310 65.8
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.7e-108 396.7 331 63.1
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 2.2e-108 396.4 345 65.2
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 1.1e-107 394.0 320 63.4
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.4e-107 393.7 317 65.0
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.9e-107 393.3 336 62.8
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.5e-107 392.9 295 68.1
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 3.2e-107 392.5 324 63.6
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 5.5e-107 391.7 292 66.8
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 7.2e-107 391.3 314 65.9
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 7.2e-107 391.3 319 62.4
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 2.1e-106 389.8 295 67.5
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 2.7e-106 389.4 350 61.1
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 2.7e-106 389.4 325 63.4
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 2.7e-106 389.4 321 64.2
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.6e-106 389.0 325 62.8
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 7.9e-106 387.9 319 63.3
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.0e-105 387.5 286 68.5
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 2.3e-105 386.3 303 65.3
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 6.7e-105 384.8 329 60.2
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 6.7e-105 384.8 292 66.8
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 8.7e-105 384.4 376 57.7
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.9e-104 383.3 309 62.5
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 2.5e-104 382.9 311 63.7
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 7.4e-104 381.3 321 63.9
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 3.7e-103 379.0 323 60.1
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 3.7e-103 379.0 324 64.5
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 4.8e-103 378.6 337 60.8
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 6.3e-103 378.3 294 66.7
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 8.2e-103 377.9 292 66.4
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 4.1e-102 375.6 316 63.6
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 9.1e-102 374.4 295 64.7
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 9.1e-102 374.4 316 63.6
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.5e-101 373.6 317 60.6
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 4.5e-101 372.1 328 58.2
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.3e-100 370.5 318 61.3
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 2.2e-100 369.8 320 60.3
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.1e-99 367.5 333 59.8
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 1.4e-99 367.1 320 60.9
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 1.9e-99 366.7 312 61.9
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 7.2e-99 364.8 318 61.0
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 9.4e-99 364.4 305 62.0
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.4e-99 364.4 262 69.5
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 2.7e-98 362.8 324 59.9
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.0e-97 360.9 320 60.3
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.0e-97 360.9 320 60.3
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 3.0e-97 359.4 299 62.5
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 3.9e-97 359.0 331 57.7
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 3.9e-97 359.0 311 62.1
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 3.9e-97 359.0 386 53.4
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 3.9e-97 359.0 305 62.0
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 3.9e-97 359.0 322 59.9
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 2.6e-96 356.3 309 61.2
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 2.6e-96 356.3 319 59.9
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 3.3e-96 355.9 309 61.2
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 1.3e-95 354.0 309 60.5
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 1.3e-95 354.0 317 59.3
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 1.7e-95 353.6 308 61.0
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 2.2e-95 353.2 321 58.9
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 2.8e-95 352.8 320 59.1
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 2.8e-95 352.8 320 59.1
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 2.8e-95 352.8 316 58.9
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 4.8e-95 352.1 317 59.6
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 8.2e-95 351.3 313 60.7
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 2.4e-94 349.7 309 60.2
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.2e-93 347.4 320 57.8
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 2.0e-93 346.7 398 48.2
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 3.4e-93 345.9 314 59.6
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 4.5e-93 345.5 325 57.5
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.8e-92 342.4 303 62.4
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 8.5e-92 341.3 329 57.4
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-91 340.5 309 59.5
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.2e-91 338.2 384 52.1
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 6.1e-90 335.1 352 55.4
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 8.8e-89 331.3 327 56.0
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 5.3e-86 322.0 325 55.4
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 4.7e-82 308.9 315 55.6
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 5.7e-80 302.0 317 53.3
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 6.3e-79 298.5 306 52.9
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 9.1e-78 294.7 312 53.5
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.7e-77 293.1 291 53.3
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 3.7e-71 272.7 314 52.5
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 4.1e-70 269.2 316 51.3
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 1.7e-68 263.8 248 54.8
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 2.3e-68 263.5 333 49.2
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 2.5e-67 260.0 251 58.6
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 2.0e-64 250.4 314 48.4
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 1.6e-61 240.7 270 51.5
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 2.5e-59 233.4 323 45.8
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 9.5e-59 231.5 180 64.4
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 5.2e-57 225.7 220 59.1
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 1.3e-55 221.1 167 66.5
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-54 217.6 255 51.8
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 1.9e-54 217.2 162 68.5
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 5.8e-48 195.7 160 60.6
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.4e-46 191.0 133 72.9
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.2e-45 188.0 179 58.7
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 7.3e-43 178.7 311 38.9
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 4.7e-42 176.0 175 56.6
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.0e-36 158.3 160 60.0
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 8.9e-33 145.2 160 55.6
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 4.2e-30 136.3 289 36.7
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.1e-29 134.0 112 63.4
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 7.3e-27 125.6 137 54.0
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.2e-26 124.8 314 33.4
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 9.6e-19 98.6 79 59.5
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 2.8e-18 97.1 75 58.7
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 4.8e-18 96.3 79 63.3
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 8.1e-18 95.5 89 56.2
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 9.0e-17 92.0 106 49.1
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 7.9e-13 79.0 61 65.6
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 9.6e-11 72.0 38 94.7
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 4.8e-10 69.7 56 53.6
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 1.8e-09 67.8 79 53.2
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 1.8e-09 67.8 56 53.6
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.5e-06 57.4 103 41.7
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 4.2e-06 56.6 66 50.0


User provided reference genes

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