Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 9.9e-166 586.6 283 100.0
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 4.4e-105 385.2 315 65.1
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 1.4e-95 353.6 279 67.4
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 1.8e-82 310.1 367 48.8
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 2.6e-81 306.2 367 47.7
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 2.6e-81 306.2 367 48.0
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 5.8e-81 305.1 367 48.0
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 2.2e-80 303.1 367 48.5
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 1.1e-79 300.8 367 47.7
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 1.4e-79 300.4 367 47.4
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 1.8e-79 300.1 365 47.4
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 3.2e-79 299.3 365 47.1
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 7.0e-79 298.1 368 46.7
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 9.2e-79 297.7 363 47.7
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 1.7e-77 293.5 367 46.9
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 6.6e-77 291.6 368 45.9
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 2.1e-75 286.6 364 47.0
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 6.2e-75 285.0 367 46.3
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 1.4e-74 283.9 363 46.6
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 1.4e-74 283.9 368 47.3
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 6.8e-74 281.6 363 46.3
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 8.9e-74 281.2 368 46.2
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 1.5e-73 280.4 362 46.7
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 2.6e-73 279.6 364 46.2
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 4.4e-73 278.9 368 46.2
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 5.8e-73 278.5 364 46.2
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 5.8e-73 278.5 368 46.7
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 9.8e-73 277.7 362 45.6
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 1.3e-72 277.3 366 45.9
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 1.3e-72 277.3 368 45.9
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 1.7e-72 276.9 368 45.7
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 2.9e-72 276.2 364 45.9
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 3.7e-72 275.8 368 45.9
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 4.9e-72 275.4 367 45.5
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 4.9e-72 275.4 368 45.4
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 6.4e-72 275.0 368 45.1
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 6.4e-72 275.0 368 45.4
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 6.4e-72 275.0 362 45.0
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 8.3e-72 274.6 367 45.2
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 1.1e-71 274.2 363 45.2
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 1.1e-71 274.2 361 45.2
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 1.4e-71 273.9 363 45.7
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 1.9e-71 273.5 368 45.9
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.4e-71 273.1 366 45.4
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 2.4e-71 273.1 369 46.3
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 3.2e-71 272.7 368 45.7
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 3.2e-71 272.7 366 45.6
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 4.1e-71 272.3 357 46.2
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 5.4e-71 271.9 363 45.7
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 5.4e-71 271.9 369 45.3
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 1.2e-70 270.8 377 43.2
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 2.1e-70 270.0 344 47.1
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 2.1e-70 270.0 363 45.7
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 3.5e-70 269.2 363 45.7
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 3.5e-70 269.2 364 46.4
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 3.5e-70 269.2 364 45.3
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 3.5e-70 269.2 363 46.3
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 3.5e-70 269.2 363 46.3
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 4.6e-70 268.9 363 46.3
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 4.6e-70 268.9 364 45.9
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 4.6e-70 268.9 363 46.0
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.6e-70 268.9 359 46.0
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 4.6e-70 268.9 363 45.7
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 6.0e-70 268.5 363 46.0
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 6.0e-70 268.5 363 46.0
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 6.0e-70 268.5 363 46.0
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 6.0e-70 268.5 368 44.8
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 6.0e-70 268.5 368 44.8
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 6.0e-70 268.5 368 44.8
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 7.8e-70 268.1 361 45.2
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 1.0e-69 267.7 367 44.7
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 1.7e-69 266.9 359 45.7
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.7e-69 266.9 359 45.7
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 2.3e-69 266.5 363 44.1
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 2.3e-69 266.5 366 45.1
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 3.0e-69 266.2 363 44.6
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 3.0e-69 266.2 363 46.0
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 3.0e-69 266.2 363 46.0
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 3.0e-69 266.2 363 46.0
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 3.0e-69 266.2 364 45.3
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 3.9e-69 265.8 364 45.3
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 5.0e-69 265.4 360 45.0
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 6.6e-69 265.0 363 45.7
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 6.6e-69 265.0 363 45.7
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 8.6e-69 264.6 361 45.4
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 1.1e-68 264.2 367 45.0
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 1.1e-68 264.2 363 44.9
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 1.5e-68 263.8 360 44.7
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 1.9e-68 263.5 363 45.7
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 3.3e-68 262.7 368 43.5
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 3.3e-68 262.7 367 43.3
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 1.6e-67 260.4 363 44.4
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 4.7e-67 258.8 359 44.8
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 6.2e-67 258.5 320 49.1
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 6.2e-67 258.5 364 45.6
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 6.2e-67 258.5 337 46.0
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 2.3e-66 256.5 362 43.4
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 2.3e-66 256.5 363 43.3
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 4.0e-66 255.8 367 43.3
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 2.0e-65 253.4 381 42.3
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 1.7e-64 250.4 368 42.9
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 2.2e-64 250.0 339 45.7
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 1.9e-63 246.9 370 41.9
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 3.2e-63 246.1 340 44.4
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 5.4e-63 245.4 364 43.4
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 9.2e-63 244.6 369 41.7
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 2.1e-62 243.4 362 43.1
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 2.7e-62 243.0 369 41.5
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 2.7e-62 243.0 368 41.3
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 3.5e-62 242.7 369 40.7
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 2.1e-59 233.4 343 42.6
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 3.6e-59 232.6 350 42.6
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 1.1e-58 231.1 366 40.2
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 4.0e-58 229.2 359 40.9
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 2.2e-56 223.4 351 41.0
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 9.2e-55 218.0 368 39.9
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 3.0e-53 213.0 347 39.5
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 4.3e-52 209.1 354 39.3
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 3.6e-51 206.1 276 46.0
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 1.1e-50 204.5 331 40.8
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 6.9e-50 201.8 343 40.5
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 5.8e-49 198.7 367 35.4
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 1.1e-47 194.5 302 41.7
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 3.2e-47 193.0 166 60.8
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 4.2e-47 192.6 339 38.3
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 3.3e-44 183.0 195 52.3
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 6.7e-37 158.7 320 34.7
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.4e-31 140.2 221 41.6
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 8.7e-29 131.7 352 29.5
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 1.5e-28 131.0 122 60.7
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 5.6e-28 129.0 345 30.7
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 2.4e-26 123.6 108 56.5
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 6.3e-19 99.0 129 46.5
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 6.9e-18 95.5 202 34.7
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 2.2e-16 90.5 65 61.5
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 3.3e-12 76.6 108 43.5
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 2.1e-06 57.4 48 56.2


User provided reference genes

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