Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 5.5e-158 560.8 268 100.0
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 1.8e-100 369.8 328 60.4
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 3.5e-96 355.5 279 67.4
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 1.2e-83 313.9 380 47.1
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 1.7e-82 310.1 380 45.5
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 2.9e-82 309.3 378 46.3
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 4.9e-82 308.5 380 45.8
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 1.1e-81 307.4 380 46.8
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 1.9e-81 306.6 380 45.5
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 9.3e-81 304.3 380 45.3
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 9.3e-81 304.3 380 45.8
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 7.9e-80 301.2 380 45.8
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 5.1e-79 298.5 380 44.5
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 7.4e-78 294.7 381 45.7
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 1.3e-77 293.9 380 43.9
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 2.4e-76 289.7 381 44.1
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 2.4e-76 289.7 380 43.2
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 2.4e-76 289.7 381 44.1
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 6.9e-76 288.1 380 44.2
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 2.0e-75 286.6 380 43.9
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 2.6e-75 286.2 380 43.9
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 3.4e-75 285.8 377 44.3
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 4.5e-75 285.4 381 44.1
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 5.8e-75 285.0 381 43.3
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 7.6e-75 284.6 380 44.5
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 7.6e-75 284.6 381 43.8
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 9.9e-75 284.3 381 44.1
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 1.3e-74 283.9 381 43.8
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 1.7e-74 283.5 376 43.6
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 2.2e-74 283.1 381 44.1
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 2.2e-74 283.1 380 43.9
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 2.9e-74 282.7 379 43.8
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 3.8e-74 282.3 381 43.3
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 3.8e-74 282.3 381 43.0
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 1.1e-73 280.8 355 44.5
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 1.1e-73 280.8 381 43.8
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 1.4e-73 280.4 381 43.0
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 1.9e-73 280.0 381 43.8
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 1.9e-73 280.0 382 42.9
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 2.5e-73 279.6 375 43.2
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 4.2e-73 278.9 381 43.0
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 4.2e-73 278.9 381 43.0
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 4.2e-73 278.9 380 43.2
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 5.5e-73 278.5 381 42.8
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 5.5e-73 278.5 381 43.0
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 5.5e-73 278.5 384 42.7
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 7.1e-73 278.1 380 43.2
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 7.1e-73 278.1 381 42.5
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 7.1e-73 278.1 380 43.7
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 7.1e-73 278.1 381 43.6
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 9.3e-73 277.7 376 43.4
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 9.3e-73 277.7 376 43.4
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 9.3e-73 277.7 379 42.5
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 9.3e-73 277.7 379 43.0
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 1.6e-72 276.9 381 43.3
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 2.1e-72 276.6 378 42.9
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 2.1e-72 276.6 380 43.4
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 2.1e-72 276.6 380 43.4
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 2.7e-72 276.2 381 42.8
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 2.7e-72 276.2 381 42.5
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 2.7e-72 276.2 376 43.1
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 2.7e-72 276.2 381 43.3
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 4.6e-72 275.4 379 41.7
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 3.9e-71 272.3 376 42.6
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 3.9e-71 272.3 381 42.3
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 3.9e-71 272.3 381 42.3
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 3.9e-71 272.3 381 42.3
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 5.1e-71 271.9 380 43.2
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 6.7e-71 271.6 381 42.8
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 6.7e-71 271.6 381 42.8
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 8.7e-71 271.2 381 42.5
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 1.1e-70 270.8 379 42.2
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 1.1e-70 270.8 381 42.8
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 1.1e-70 270.8 381 42.5
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 1.9e-70 270.0 380 42.6
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 1.9e-70 270.0 381 42.3
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 1.9e-70 270.0 381 42.3
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 1.9e-70 270.0 380 42.9
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 3.3e-70 269.2 381 42.3
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 4.3e-70 268.9 378 42.6
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 5.6e-70 268.5 378 41.8
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 9.6e-70 267.7 381 42.3
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 2.1e-69 266.5 381 41.7
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 1.4e-68 263.8 381 40.9
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 1.8e-68 263.5 395 39.7
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 3.1e-68 262.7 377 41.4
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 4.0e-68 262.3 379 41.7
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 4.0e-68 262.3 381 41.7
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 4.0e-68 262.3 381 41.7
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 4.0e-68 262.3 381 41.7
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 4.0e-68 262.3 381 41.7
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 4.0e-68 262.3 381 41.7
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 1.5e-67 260.4 381 41.5
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 2.0e-67 260.0 382 39.8
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 2.6e-67 259.6 381 40.7
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 2.2e-66 256.5 380 40.3
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 2.2e-66 256.5 359 43.2
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 2.9e-66 256.1 381 41.2
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 4.2e-65 252.3 382 40.1
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 5.5e-65 251.9 345 42.0
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 1.2e-64 250.8 328 44.5
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 1.2e-64 250.8 380 38.4
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 2.1e-64 250.0 382 39.0
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 2.1e-64 250.0 346 43.4
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 2.7e-64 249.6 382 39.8
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 2.7e-64 249.6 382 39.8
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 3.5e-64 249.2 402 39.3
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 1.3e-63 247.3 322 43.8
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 2.3e-63 246.5 351 42.5
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 3.9e-63 245.7 380 39.7
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 4.3e-62 242.3 381 38.6
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 9.7e-62 241.1 382 38.2
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 2.4e-60 236.5 376 37.8
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 1.3e-58 230.7 380 38.9
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 1.3e-58 230.7 333 42.3
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 8.5e-58 228.0 380 36.8
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 2.3e-55 219.9 381 36.5
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 2.5e-54 216.5 355 39.7
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 2.0e-51 206.8 327 39.1
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 2.0e-51 206.8 372 36.3
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 2.6e-51 206.5 356 36.2
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 8.5e-50 201.4 382 34.3
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 3.6e-48 196.1 286 42.7
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 2.5e-41 173.3 305 36.7
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 5.2e-39 165.6 171 52.0
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 1.1e-38 164.5 206 46.1
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 4.8e-37 159.1 117 65.0
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 1.8e-31 140.6 322 30.7
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 1.3e-29 134.4 130 56.9
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 6.3e-29 132.1 201 39.8
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 4.5e-27 125.9 378 27.0
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 2.2e-26 123.6 351 27.4
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 3.1e-20 103.2 165 38.2
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 2.9e-18 96.7 134 45.5
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 8.0e-16 88.6 68 55.9
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 6.8e-15 85.5 123 40.7
GSVIVG01004519001 Vitis vinifera HOM05D003523 ORTHO05D004493 7.5e-06 55.5 31 83.9


User provided reference genes

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