Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 4057.7 2188 100.0
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 3598.5 2200 88.9
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 3572.7 2231 87.5
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 3469.1 2203 85.7
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 3237.2 2217 79.3
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 3172.9 2207 78.8
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 3167.5 2206 77.9
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 3135.9 2206 77.3
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 3110.5 2209 76.0
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 3052.3 2208 75.1
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 3021.5 2208 74.5
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 2832.4 2119 73.3
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2468.3 2222 63.6
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2410.9 2227 62.8
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2409.4 2218 61.2
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2373.6 2213 60.6
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2372.4 2235 60.6
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2368.2 2231 60.2
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2358.6 2243 59.9
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2348.9 2227 60.6
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2348.5 2240 59.8
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2346.6 2236 59.4
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2342.0 2229 60.7
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2330.4 2275 58.8
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2323.1 2266 58.7
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2317.7 2228 60.1
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2305.4 2240 57.9
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2303.5 2236 59.8
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2300.8 2284 58.1
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2286.5 2222 59.5
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2268.8 2245 59.1
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2228.8 2227 57.5
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2211.8 2282 56.8
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2186.4 2239 56.9
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2178.3 2237 56.6
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2159.8 2241 57.5
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2136.3 2246 55.5
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2112.0 2333 54.7
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2028.4 2050 56.7
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 2015.7 2237 54.2
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2011.1 2047 56.0
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1993.4 2241 53.3
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1977.6 2316 51.8
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1975.7 2216 52.8
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1973.0 2234 51.6
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 1968.4 2232 53.0
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1964.9 2228 52.1
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1958.0 2230 53.3
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 1957.6 2309 51.5
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1950.6 2233 52.1
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1946.8 2219 51.2
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1944.1 2275 52.1
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1934.5 2238 51.7
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1930.2 2278 51.7
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1911.7 2232 51.1
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1908.6 2076 53.9
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1898.6 1722 61.3
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1893.6 2197 52.7
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1886.3 2233 50.2
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1882.1 2248 52.1
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1878.2 2225 50.1
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1865.5 2222 50.1
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1865.5 2218 50.2
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1864.0 2244 51.6
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1857.0 2231 50.2
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1853.2 2252 50.2
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1845.5 2226 50.4
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1844.7 2236 50.0
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1838.2 2239 49.6
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1834.3 1903 55.4
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1833.5 2238 49.3
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1825.8 2230 50.0
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 1824.3 2300 50.4
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1807.0 2115 52.3
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1804.3 2084 52.6
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1785.8 2216 50.2
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1782.7 2268 50.0
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1773.8 2232 49.3
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1753.0 2183 50.3
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1728.8 2213 49.3
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1718.7 2211 48.6
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1715.3 2140 50.3
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1696.4 2186 48.9
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1671.8 1958 51.6
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1668.7 1391 62.5
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1624.4 1429 62.1
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1588.9 2351 44.8
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1555.4 1396 59.8
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1552.0 1396 59.7
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1422.9 2189 43.7
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1406.3 2281 42.0
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1391.7 1459 57.4
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1312.4 1254 57.3
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1169.8 2250 38.0
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1149.8 1353 52.9
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1121.3 1604 47.1
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 3.7e-292 1009.6 1238 50.7
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 6.5e-289 998.8 1277 48.9
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 2.8e-268 930.2 821 61.3
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 1.8e-254 884.4 1122 45.8
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 5.3e-251 872.8 1392 44.5
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 2.0e-229 801.2 1322 41.8
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 7.8e-194 682.9 853 56.0
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 6.9e-174 616.7 2453 28.9
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.2e-171 607.8 930 43.4
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.6e-165 588.2 486 60.5
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.5e-152 545.8 1064 40.9
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 3.6e-146 524.6 837 49.7
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 2.3e-145 521.9 837 49.7
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 6.3e-143 513.8 955 44.1
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 3.0e-137 495.0 338 80.2
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 1.4e-129 469.5 1651 27.3
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 6.8e-129 467.2 426 56.1
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.8e-126 459.1 915 36.4
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 2.4e-126 458.8 336 75.6
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 3.3e-123 448.4 342 68.1
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 5.2e-121 441.0 1373 27.9
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 6.4e-111 407.5 650 40.8
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 3.5e-109 401.7 909 36.3
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 1.0e-92 347.1 244 77.5
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 6.6e-92 344.4 336 60.4
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 1.8e-89 336.3 279 59.9
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 2.8e-82 312.4 654 41.7
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 4.0e-81 308.5 1354 24.2
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 1.2e-80 307.0 215 68.8
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 1.7e-76 293.1 272 58.8
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.0e-76 292.4 394 43.7
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 1.7e-71 276.6 452 49.1
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 1.9e-70 273.1 177 82.5
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 7.9e-61 241.1 164 73.2
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.0e-57 228.8 153 72.5
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 4.0e-57 228.8 136 83.8
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 1.5e-56 226.9 462 46.1
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 7.7e-48 198.0 129 79.8
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 5.5e-46 191.8 130 80.0
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.5e-43 183.7 742 32.3
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 6.3e-42 178.3 459 36.4
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 4.5e-40 172.2 206 46.6
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 7.2e-38 164.9 124 75.0
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.1e-37 163.3 112 71.4
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 9.4e-30 137.9 535 28.2
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.7e-29 136.3 331 33.8
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 8.0e-29 134.8 96 78.1
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 9.7e-27 127.9 80 82.5
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 1.1e-25 124.4 80 81.2
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.1e-25 122.9 219 36.1
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-17 97.8 68 66.2
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 9.4e-14 84.7 54 81.5
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.3e-12 80.1 107 48.6
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 8.8e-12 78.2 78 55.1
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 8.8e-12 78.2 211 28.9
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 1.5e-11 77.4 133 31.6
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.4e-11 75.9 51 74.5
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 3.1e-09 69.7 61 57.4
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 2.3e-07 63.5 45 68.9
arahy.Tifrunner.gnm1.ann1.U6LB1L Arachis hypogaea HOM05D046571 ORTHO05D038823 5.0e-07 62.4 87 46.0
SHI25001 Sapria himalayana HOM05D004426 ORTHO05D005417 8.6e-07 61.6 65 52.3


User provided reference genes

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