Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 0.0e+00 1437.6 711 100.0
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 0.0e+00 1343.9 711 92.5
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 0.0e+00 1338.6 711 92.3
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 0.0e+00 1235.7 713 84.6
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 0.0e+00 1216.1 715 83.1
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 0.0e+00 1211.1 712 83.7
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 0.0e+00 1210.7 715 82.8
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 0.0e+00 1196.0 711 83.0
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 0.0e+00 1090.1 566 93.8
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1085.1 715 73.6
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 0.0e+00 1084.7 647 81.6
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1084.3 715 73.3
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 0.0e+00 1079.3 714 73.9
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 4.4e-311 1070.8 705 74.0
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 2.4e-309 1065.1 709 73.3
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 5.3e-309 1063.9 717 71.3
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 1.3e-307 1059.3 712 73.2
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.1e-306 1056.2 709 71.5
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 3.2e-306 1054.7 705 71.9
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 3.2e-306 1054.7 706 72.0
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 3.2e-306 1054.7 710 70.7
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 1.6e-305 1052.4 713 71.4
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 3.6e-305 1051.2 712 71.8
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 6.1e-305 1050.4 704 72.4
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 7.9e-305 1050.0 707 73.1
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 1.7e-302 1042.3 708 71.3
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 3.7e-302 1041.2 708 71.3
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.4e-301 1039.3 709 71.4
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.2e-300 1036.2 711 70.6
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 5.9e-300 1033.9 690 72.2
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 6.5e-299 1030.4 690 71.9
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 2.5e-298 1028.5 707 71.1
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 6.3e-294 1013.8 708 70.1
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.2e-292 1009.6 701 70.3
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 2.6e-292 1008.4 710 68.6
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 6.8e-288 993.8 712 67.7
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 8.8e-288 993.4 712 67.3
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 3.4e-287 991.5 712 67.3
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 7.5e-287 990.3 702 68.4
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 8.3e-286 986.9 718 67.8
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 8.3e-286 986.9 708 66.9
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 1.1e-285 986.5 718 66.7
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 1.6e-284 982.6 712 67.3
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 3.5e-284 981.5 712 67.0
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 6.5e-283 977.2 670 73.0
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 3.6e-281 971.5 697 67.3
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 6.1e-281 970.7 709 65.2
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 8.0e-281 970.3 631 73.9
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 7.5e-279 963.8 706 65.2
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 2.8e-278 961.8 711 66.5
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 8.3e-278 960.3 706 66.6
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 1.1e-277 959.9 715 67.1
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 2.4e-277 958.7 710 65.2
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 1.6e-276 956.1 716 64.4
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 1.6e-276 956.1 717 65.7
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 7.7e-276 953.7 707 65.1
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 7.7e-276 953.7 717 65.7
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 2.9e-275 951.8 710 64.6
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 5.0e-275 951.0 710 64.6
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 5.0e-275 951.0 716 64.1
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.1e-274 949.9 710 64.6
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.9e-274 949.1 707 64.5
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 2.5e-274 948.7 707 64.8
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 3.3e-274 948.3 710 64.1
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 2.1e-273 945.7 711 66.1
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 2.1e-273 945.7 708 65.8
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 3.6e-273 944.9 706 64.6
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 5.2e-272 941.0 712 66.4
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 2.6e-271 938.7 692 67.3
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 1.3e-270 936.4 708 66.2
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 1.3e-270 936.4 704 64.3
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 6.3e-270 934.1 719 63.1
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 1.4e-269 932.9 663 68.9
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 4.1e-269 931.4 691 64.3
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.6e-268 929.5 714 64.1
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 1.3e-267 926.4 731 63.6
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 3.9e-267 924.9 717 63.7
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 5.6e-266 921.0 715 63.2
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.8e-264 916.0 714 62.9
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 3.7e-262 908.3 627 69.7
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 4.6e-260 901.4 629 68.8
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 5.6e-258 894.4 625 68.6
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 1.6e-257 892.9 718 62.7
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 4.0e-256 888.3 693 63.6
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 6.8e-256 887.5 723 60.2
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.2e-252 876.7 703 63.6
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.6e-252 876.3 589 70.3
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.6e-252 876.3 980 50.5
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 6.0e-252 874.4 542 76.6
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 5.6e-250 867.8 726 58.5
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 3.4e-247 858.6 714 59.4
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.0e-243 847.0 573 70.3
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 3.8e-238 828.6 718 59.1
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 1.1e-232 810.4 858 50.3
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 7.4e-218 761.1 974 47.4
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 5.7e-210 734.9 690 56.4
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 4.6e-196 688.7 453 73.3
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 8.2e-185 651.4 364 85.4
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 1.4e-179 634.0 754 45.4
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 9.4e-173 611.3 469 62.7
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 2.8e-161 573.2 733 42.3
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 1.4e-152 544.3 610 46.4
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 1.4e-136 491.1 279 86.4
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.3e-133 479.9 429 56.2
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 8.4e-129 465.3 368 61.1
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 2.4e-104 384.0 266 71.8
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 2.7e-95 354.0 260 68.1
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 1.8e-94 351.3 226 76.5
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 3.4e-82 310.5 291 56.0
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 8.2e-68 262.7 266 51.1
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.9e-64 251.5 167 75.4
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 4.4e-61 240.4 150 70.7
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.9e-50 203.4 256 44.5
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 2.9e-49 201.1 154 68.2
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.7e-45 186.8 226 45.6
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.7e-44 185.3 256 41.8
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 4.6e-34 150.6 155 48.4
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 2.3e-33 148.3 98 80.6
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 8.6e-33 146.4 100 78.0
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 3.3e-32 144.4 98 79.6
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.6e-31 141.0 109 61.5
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 7.0e-27 126.7 107 63.6
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.6e-26 125.6 98 60.2
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 2.0e-26 125.2 87 80.5
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-26 123.6 169 39.6
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 5.6e-24 117.1 83 60.2
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.2e-23 115.9 121 51.2
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 8.9e-22 109.8 109 52.3
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 2.4e-19 101.7 64 71.9
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 9.2e-19 99.8 109 49.5
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 2.7e-18 98.2 109 48.6
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 4.6e-18 97.4 61 72.1
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 4.6e-18 97.4 75 69.3
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.0e-17 96.3 100 51.0
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 1.3e-17 95.9 69 60.9
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.8e-15 88.2 98 52.0
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 2.3e-14 85.1 164 31.1
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 6.8e-14 83.6 77 61.0
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 1.2e-13 82.8 129 37.2
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 1.5e-13 82.4 58 63.8
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 3.4e-13 81.3 85 50.6
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 1.3e-12 79.3 53 73.6
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 3.8e-12 77.8 54 59.3
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 1.1e-11 76.3 57 63.2
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 1.9e-11 75.5 72 63.9
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 2.4e-11 75.1 57 63.2
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 2.4e-11 75.1 57 63.2
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-11 74.7 93 41.9
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 5.4e-11 73.9 70 54.3
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 6.0e-10 70.5 57 59.6
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 1.1e-08 66.2 48 62.5
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.2e-07 62.8 33 81.8
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 5.2e-06 57.4 74 47.3
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 6.9e-06 57.0 43 51.2


User provided reference genes

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