Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0140s0070 Medicago truncatula HOM05D000216 ORTHO05D003638 9.3e-66 253.4 133 100.0
LjContig00318g0018562 Lotus japonicus HOM05D000216 ORTHO05D003638 6.3e-46 187.6 162 69.1
Medtr3g029550 Medicago truncatula HOM05D000216 ORTHO05D003638 6.3e-46 187.6 162 69.1
Medtr4g051103 Medicago truncatula HOM05D000216 ORTHO05D003638 6.3e-46 187.6 162 69.1
Psat0s2754g0240 Pisum sativum HOM05D000216 ORTHO05D003638 6.3e-46 187.6 162 69.1
Psat0s2961g0080 Pisum sativum HOM05D000216 ORTHO05D003638 6.3e-46 187.6 162 69.1
Psat0s3650g0160 Pisum sativum HOM05D000216 ORTHO05D003638 6.3e-46 187.6 162 69.1
Psat1g003880 Pisum sativum HOM05D000216 ORTHO05D003638 6.3e-46 187.6 162 69.1
Psat6g219400 Pisum sativum HOM05D000216 ORTHO05D003638 6.3e-46 187.6 162 69.1
Psat7g033680 Pisum sativum HOM05D000216 ORTHO05D003638 6.3e-46 187.6 162 69.1
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 6.3e-46 187.6 162 69.1
ATCG00150 Arabidopsis thaliana HOM05D000216 ORTHO05D003638 8.2e-46 187.2 162 69.1
arahy.Tifrunner.gnm1.ann1.49E3RC Arachis hypogaea HOM05D000216 ORTHO05D003638 8.2e-46 187.2 162 68.5
arahy.Tifrunner.gnm1.ann1.77R9Y6 Arachis hypogaea HOM05D000216 ORTHO05D003638 8.2e-46 187.2 162 68.5
arahy.Tifrunner.gnm1.ann1.KPH33C Arachis hypogaea HOM05D000216 ORTHO05D003638 8.2e-46 187.2 162 68.5
BNapus_Darmor_BZH_scaffold_253p00040 Brassica napus HOM05D000216 ORTHO05D003638 8.2e-46 187.2 162 69.1
BolSC37t60770H Brassica oleracea HOM05D000216 ORTHO05D003638 8.2e-46 187.2 162 69.1
BolSC45t60878H Brassica oleracea HOM05D000216 ORTHO05D003638 8.2e-46 187.2 162 69.1
BraSC151t45693Z Brassica rapa HOM05D000216 ORTHO05D003638 8.2e-46 187.2 162 69.1
BraSC59t46515Z Brassica rapa HOM05D000216 ORTHO05D003638 8.2e-46 187.2 162 69.1
CARHR281900 Cardamine hirsuta HOM05D000216 ORTHO05D003638 8.2e-46 187.2 162 69.1
Ciclev10013984m.g Citrus clementina HOM05D000216 ORTHO05D003638 8.2e-46 187.2 162 69.1
PGR111G0049 Punica granatum HOM05D000216 ORTHO05D003638 1.1e-45 186.8 162 68.5
RcHm_v2.0_CPg0502431 Rosa chinensis HOM05D000216 ORTHO05D003638 1.4e-45 186.4 162 68.5
Sed0006587 Sechium edule HOM05D000216 ORTHO05D003638 1.4e-45 186.4 162 68.5
Sed0012920 Sechium edule HOM05D000216 ORTHO05D003638 1.4e-45 186.4 162 68.5
unitig_91.g26494 Utricularia gibba HOM05D000216 ORTHO05D003638 1.4e-45 186.4 162 68.5
PSO548G0039 Papaver somniferum HOM05D000216 ORTHO05D003638 1.8e-45 186.0 162 68.5
Zm00001eb435250 Zea mays HOM05D000216 ORTHO05D003638 1.8e-45 186.0 162 67.9
Zm00001eb435460 Zea mays HOM05D000216 ORTHO05D003638 1.8e-45 186.0 162 67.9
Zm00001eb435730 Zea mays HOM05D000216 ORTHO05D003638 1.8e-45 186.0 162 67.9
Zm00001eb436810 Zea mays HOM05D000216 ORTHO05D003638 1.8e-45 186.0 162 67.9
Zm00001eb437240 Zea mays HOM05D000216 ORTHO05D003638 1.8e-45 186.0 162 67.9
Zm00001eb438330 Zea mays HOM05D000216 ORTHO05D003638 1.8e-45 186.0 162 67.9
Zm00001eb441010 Zea mays HOM05D000216 ORTHO05D003638 1.8e-45 186.0 162 67.9
Zm00001eb442740 Zea mays HOM05D000216 ORTHO05D003638 1.8e-45 186.0 162 67.9
Medtr0002s0530 Medicago truncatula HOM05D000216 ORTHO05D003638 2.4e-45 185.7 162 67.3
DCAR_032472 Daucus carota HOM05D000216 ORTHO05D003638 3.1e-45 185.3 162 67.9
Potri.013G139080 Populus trichocarpa HOM05D000216 ORTHO05D003638 5.3e-45 184.5 162 68.5
HanXRQChr08g0210201 Helianthus annuus HOM05D000216 ORTHO05D003638 7.0e-45 184.1 162 67.9
HanXRQChr10g0282501 Helianthus annuus HOM05D000216 ORTHO05D003638 7.0e-45 184.1 162 67.9
HanXRQChr11g0326631 Helianthus annuus HOM05D000216 ORTHO05D003638 7.0e-45 184.1 162 67.9
HanXRQChr13g0415501 Helianthus annuus HOM05D000216 ORTHO05D003638 7.0e-45 184.1 162 67.9
HanXRQCPg0579821 Helianthus annuus HOM05D000216 ORTHO05D003638 7.0e-45 184.1 162 67.9
Phvul.003G256800 Phaseolus vulgaris HOM05D000216 ORTHO05D003638 7.0e-45 184.1 162 67.9
SalBow1G2877 Salvia bowleyana HOM05D000216 ORTHO05D003638 7.0e-45 184.1 162 67.9
Sed0015108 Sechium edule HOM05D000216 ORTHO05D003638 7.0e-45 184.1 162 67.9
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 9.1e-45 183.7 162 67.9
Lsat_1_v5_gn_2_1641 Lactuca sativa HOM05D000216 ORTHO05D003638 9.1e-45 183.7 162 67.9
Lj2C1237G0 Lonicera japonica HOM05D000216 ORTHO05D003638 9.1e-45 183.7 162 67.9
Lj2C1238G11 Lonicera japonica HOM05D000216 ORTHO05D003638 9.1e-45 183.7 162 67.9
LjContig00489g0001571 Lotus japonicus HOM05D000216 ORTHO05D003638 9.1e-45 183.7 162 67.9
Ah.10g027620 Amaranthus hybridus HOM05D000216 ORTHO05D003638 1.2e-44 183.3 162 67.9
Ah.10g027780 Amaranthus hybridus HOM05D000216 ORTHO05D003638 1.2e-44 183.3 162 67.9
EL10As12g24015 Beta vulgaris HOM05D000216 ORTHO05D003638 1.5e-44 183.0 162 67.9
Lalb_Chr07g0192171 Lupinus albus HOM05D000216 ORTHO05D003638 1.5e-44 183.0 162 68.5
AUR62012105 Chenopodium quinoa HOM05D000216 ORTHO05D003638 3.5e-44 181.8 162 67.3
Lsat_1_v5_gn_8_19261 Lactuca sativa HOM05D000216 ORTHO05D003638 5.9e-44 181.0 162 67.3
Hund03957 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund18044 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund27559 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund27611 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund27865 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund27918 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund27995 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund28152 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund28178 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund28276 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund28388 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund28560 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund28651 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund28794 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund29068 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund29351 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund29741 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund29885 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund30206 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund30310 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund30432 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund30437 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund30852 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund31037 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
Hund31056 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.0e-43 180.3 162 66.7
HanXRQChr00c0601g0576511 Helianthus annuus HOM05D000216 ORTHO05D003638 1.3e-43 179.9 135 76.3
CAN.G386.26 Capsicum annuum HOM05D000216 ORTHO05D003638 1.7e-43 179.5 162 66.7
QL93p0837_0003 Quercus lobata HOM05D000216 ORTHO05D003638 3.8e-43 178.3 161 66.5
Hund27653 Selenicereus undatus HOM05D000216 ORTHO05D003638 6.5e-43 177.6 162 66.0
SEGI_01684 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 8.5e-43 177.2 160 68.1
SEGI_03518 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 8.5e-43 177.2 160 68.1
SEGI_24812 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 8.5e-43 177.2 160 68.1
SEGI_31181 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 8.5e-43 177.2 160 68.1
Mapoly0044s0072 Marchantia polymorpha HOM05D000216 ORTHO05D003638 7.2e-42 174.1 160 64.4
Ah.10g028520 Amaranthus hybridus HOM05D000216 ORTHO05D003638 1.6e-41 172.9 162 64.8
Oeu028759.1 Olea europaea HOM05D000216 ORTHO05D003638 2.1e-41 172.6 162 63.0
SEGI_00749 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.7e-41 172.2 160 66.9
Lalb_Chr09g0335341 Lupinus albus HOM05D000216 ORTHO05D003638 8.0e-41 170.6 137 74.5
CSS0018496 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D003638 2.3e-40 169.1 156 66.7
CDE02G3154 Ceratophyllum demersum HOM05D000216 ORTHO05D003638 5.2e-40 167.9 154 66.2
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 8.8e-40 167.2 156 65.4
Psat5g134680 Pisum sativum HOM05D000216 ORTHO05D003638 2.6e-39 165.6 200 55.0
Psat7g038960 Pisum sativum HOM05D000216 ORTHO05D003638 5.7e-39 164.5 161 63.4
Lalb_Chr06g0172971 Lupinus albus HOM05D000216 ORTHO05D003638 8.2e-38 160.6 92 96.7
HanXRQChr00c0165g0572141 Helianthus annuus HOM05D000216 ORTHO05D003638 1.8e-37 159.5 100 89.0
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 2.4e-37 159.1 100 89.0
Solyc00g500335.1 Solanum lycopersicum HOM05D000216 ORTHO05D003638 2.4e-37 159.1 100 89.0
Hma1.2p1_0414F.1_g147690 Hydrangea macrophylla HOM05D000216 ORTHO05D003638 3.1e-37 158.7 99 88.9
HanXRQChr00c0560g0575801 Helianthus annuus HOM05D000216 ORTHO05D003638 9.1e-37 157.1 95 91.6
SGA_v2.0_scaffold95G28823 Striga asiatica HOM05D000216 ORTHO05D003638 9.1e-37 157.1 100 88.0
CAN.G63.18 Capsicum annuum HOM05D000216 ORTHO05D003638 3.5e-36 155.2 100 87.0
Gohir.D02G093150 Gossypium hirsutum HOM05D000216 ORTHO05D003638 4.5e-36 154.8 124 73.4
Gorai.005G105500 Gossypium raimondii HOM05D000216 ORTHO05D003638 4.5e-36 154.8 120 76.7
CAN.G201.5 Capsicum annuum HOM05D000216 ORTHO05D003638 5.9e-36 154.5 100 87.0
Medtr6g025470 Medicago truncatula HOM05D000216 ORTHO05D003638 7.7e-36 154.1 141 63.8
Hund20346 Selenicereus undatus HOM05D000216 ORTHO05D003638 7.2e-34 147.5 99 81.8
Gorai.013G017800 Gossypium raimondii HOM05D000216 ORTHO05D003638 1.6e-33 146.4 105 80.0
Lalb_Chr06g0173061 Lupinus albus HOM05D000216 ORTHO05D003638 2.1e-33 146.0 98 84.7
arahy.Tifrunner.gnm1.ann1.M78D68 Arachis hypogaea HOM05D000216 ORTHO05D003638 3.0e-32 142.1 152 58.6
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 3.0e-32 142.1 126 67.5
TPR.G8664 Trifolium pratense HOM05D000216 ORTHO05D003638 5.7e-31 137.9 103 78.6
CAN.G229.14 Capsicum annuum HOM05D000216 ORTHO05D003638 1.3e-30 136.7 90 86.7
Sed0025462 Sechium edule HOM05D000216 ORTHO05D003638 1.3e-30 136.7 100 80.0
Migut.L00411 Erythranthe guttata HOM05D000216 ORTHO05D003638 4.8e-30 134.8 89 86.5
TPR.G8651 Trifolium pratense HOM05D000216 ORTHO05D003638 1.8e-29 132.9 103 74.8
Gorai.006G017100 Gossypium raimondii HOM05D000216 ORTHO05D003638 4.1e-29 131.7 91 78.0
Nn4g23650 Nelumbo nucifera HOM05D000216 ORTHO05D003638 7.0e-29 131.0 78 96.2
CAN.G517.19 Capsicum annuum HOM05D000216 ORTHO05D003638 1.2e-28 130.2 87 83.9
Gorai.006G159100 Gossypium raimondii HOM05D000216 ORTHO05D003638 4.5e-28 128.3 98 75.5
Hund01856 Selenicereus undatus HOM05D000216 ORTHO05D003638 7.7e-28 127.5 120 65.0
Gohir.D09G014950 Gossypium hirsutum HOM05D000216 ORTHO05D003638 2.2e-27 125.9 91 76.9
Psat0s2288g0040 Pisum sativum HOM05D000216 ORTHO05D003638 8.5e-27 124.0 83 85.5
Hund15942 Selenicereus undatus HOM05D000216 ORTHO05D003638 3.2e-26 122.1 125 60.8
Lsat_1_v5_gn_3_17360 Lactuca sativa HOM05D000216 ORTHO05D003638 1.2e-25 120.2 128 59.4
Medtr5g022790 Medicago truncatula HOM05D001076 ORTHO05D001603 4.7e-25 118.2 71 95.8
Hund01860 Selenicereus undatus HOM05D000216 ORTHO05D003638 4.7e-25 118.2 112 65.2
Medtr6g025340 Medicago truncatula HOM05D000216 ORTHO05D003638 6.1e-25 117.9 92 72.8
arahy.Tifrunner.gnm1.ann1.3KQL5I Arachis hypogaea HOM05D000216 ORTHO05D003518 1.0e-24 117.1 76 86.8
Migut.D01339 Erythranthe guttata HOM05D000216 ORTHO05D003638 1.0e-24 117.1 70 95.7
Psat2g044440 Pisum sativum HOM05D000216 ORTHO05D003518 4.0e-24 115.2 129 57.4
Gorai.005G029600 Gossypium raimondii HOM05D000216 ORTHO05D003638 5.2e-24 114.8 86 77.9
Gohir.D02G023550 Gossypium hirsutum HOM05D000216 ORTHO05D003638 1.2e-23 113.6 86 76.7
HanXRQChr13g0425811 Helianthus annuus HOM05D000216 ORTHO05D003638 1.3e-22 110.2 119 57.1
Medtr7g116680 Medicago truncatula HOM05D000216 ORTHO05D003638 8.3e-22 107.5 162 46.3
Sed0022034 Sechium edule HOM05D000216 ORTHO05D003638 3.5e-20 102.1 136 50.7
SEGI_26801 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 5.0e-19 98.2 113 55.8
SMO086G0032 Selaginella moellendorffii HOM05D000216 ORTHO05D003638 1.1e-18 97.1 162 45.7
Gohir.D04G020733 Gossypium hirsutum HOM05D000216 ORTHO05D003638 1.9e-18 96.3 72 77.8
Hund30593 Selenicereus undatus HOM05D000216 ORTHO05D003638 1.9e-18 96.3 75 77.3
Phvul.001G151500 Phaseolus vulgaris HOM05D000216 ORTHO05D003638 2.1e-17 92.8 61 88.5
Oeu022568.1 Olea europaea HOM05D000216 ORTHO05D003638 2.3e-16 89.4 105 51.4
HanXRQChr12g0380621 Helianthus annuus HOM05D000216 ORTHO05D003638 1.5e-15 86.7 102 51.0
Oeu045559.1 Olea europaea HOM05D000216 ORTHO05D003518 2.0e-15 86.3 56 89.3
Gorai.012G024800 Gossypium raimondii HOM05D000216 ORTHO05D003638 2.6e-15 85.9 72 70.8
HanXRQChr13g0425721 Helianthus annuus HOM05D000216 ORTHO05D003638 3.4e-15 85.5 57 82.5
MD16G1100100 Malus domestica HOM05D000216 ORTHO05D003638 3.4e-15 85.5 103 49.5
Nitab4.5_0000559g0180 Nicotiana tabacum HOM05D000216 ORTHO05D028337 2.2e-14 82.8 116 48.3
PGSC0003DMG403017663 Solanum tuberosum HOM05D000216 ORTHO05D003518 2.2e-14 82.8 50 96.0
CAN.G993.7 Capsicum annuum HOM05D000216 ORTHO05D003638 2.8e-14 82.4 102 49.0
CAN.G1185.18 Capsicum annuum HOM05D000216 ORTHO05D003638 3.2e-13 79.0 102 48.0
TPR.G20776 Trifolium pratense HOM05D000216 ORTHO05D003638 3.2e-13 79.0 95 49.5
arahy.Tifrunner.gnm1.ann1.TG7LSU Arachis hypogaea HOM05D000216 ORTHO05D003638 1.2e-12 77.0 82 56.1
Migut.C00051 Erythranthe guttata HOM05D000216 ORTHO05D003638 1.2e-12 77.0 49 87.8
Solyc00g500051.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.2e-12 77.0 42 97.6
Solyc00g500134.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.2e-12 77.0 42 97.6
Solyc00g500204.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.2e-12 77.0 42 97.6
Solyc00g500291.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.2e-12 77.0 42 97.6
Solyc00g500320.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.2e-12 77.0 42 97.6
Nitab4.5_0001140g0200 Nicotiana tabacum HOM05D000216 ORTHO05D003638 4.5e-12 75.1 58 72.4
Nitab4.5_0001639g0020 Nicotiana tabacum HOM05D000216 ORTHO05D003638 1.3e-11 73.6 41 92.7
Nitab4.5_0002175g0020 Nicotiana tabacum HOM05D000216 ORTHO05D003638 2.3e-11 72.8 50 74.0
Eucgr.G00227 Eucalyptus grandis HOM05D000216 ORTHO05D003638 6.6e-11 71.2 55 78.2
Gohir.D08G103720 Gossypium hirsutum HOM05D000216 ORTHO05D003518 2.5e-10 69.3 72 54.2
Potri.019G028601 Populus trichocarpa HOM05D000216 ORTHO05D003638 2.5e-10 69.3 38 92.1
Solyc08g028875.1 Solanum lycopersicum HOM05D000216 ORTHO05D003638 4.7e-09 65.1 106 51.9
Migut.D01337 Erythranthe guttata HOM05D000216 ORTHO05D003638 4.0e-08 62.0 88 42.0
Glyma.19G054201 Glycine max HOM05D000216 ORTHO05D003638 5.2e-08 61.6 32 96.9
Nitab4.5_0001015g0070 Nicotiana tabacum HOM05D000216 ORTHO05D003638 5.2e-08 61.6 106 49.1
Oeu024824.1 Olea europaea HOM05D000216 ORTHO05D003518 1.5e-07 60.1 41 78.0
MD16G1263300 Malus domestica HOM05D000216 ORTHO05D003638 5.8e-07 58.2 39 76.9
Eucgr.A00333 Eucalyptus grandis HOM05D000216 ORTHO05D003638 2.2e-06 56.2 29 82.8


User provided reference genes

Program Settings