Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 9.8e-40 166.8 91 100.0
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 3.8e-23 111.7 68 79.4
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 8.4e-23 110.5 68 77.9
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 3.2e-22 108.6 66 78.8
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 4.2e-22 108.2 67 77.6
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 4.2e-22 108.2 67 77.6
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 4.2e-22 108.2 67 77.6
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 4.2e-22 108.2 67 77.6
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 5.4e-22 107.8 67 76.1
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 9.3e-22 107.1 71 71.8
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 9.3e-22 107.1 67 77.6
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.2e-21 106.7 71 69.0
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 1.6e-21 106.3 70 70.0
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 2.7e-21 105.5 66 74.2
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 2.7e-21 105.5 70 71.4
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.5e-21 105.1 67 76.1
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 3.5e-21 105.1 71 70.4
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 6.0e-21 104.4 71 70.4
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 6.0e-21 104.4 71 69.0
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 6.0e-21 104.4 66 74.2
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 1.0e-20 103.6 70 72.9
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 1.0e-20 103.6 62 75.8
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 1.0e-20 103.6 66 72.7
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 1.0e-20 103.6 66 74.2
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 1.0e-20 103.6 70 70.0
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 1.0e-20 103.6 66 74.2
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 1.3e-20 103.2 66 74.2
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 1.3e-20 103.2 66 75.8
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 1.3e-20 103.2 66 75.8
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 1.3e-20 103.2 66 75.8
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.7e-20 102.8 70 70.0
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 2.3e-20 102.4 87 58.6
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 2.3e-20 102.4 66 72.7
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 3.0e-20 102.1 87 57.5
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 3.0e-20 102.1 66 74.2
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 3.0e-20 102.1 66 74.2
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 3.0e-20 102.1 66 74.2
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 3.0e-20 102.1 89 58.4
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.0e-20 102.1 89 58.4
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 3.9e-20 101.7 66 74.2
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.9e-20 101.7 66 71.2
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 3.9e-20 101.7 66 72.7
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 3.9e-20 101.7 85 61.2
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 5.1e-20 101.3 66 75.8
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 5.1e-20 101.3 71 67.6
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 5.1e-20 101.3 71 67.6
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 8.7e-20 100.5 66 72.7
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 8.7e-20 100.5 66 72.7
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.1e-19 100.1 66 71.2
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 1.1e-19 100.1 66 69.7
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 1.1e-19 100.1 80 58.8
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 1.1e-19 100.1 71 63.4
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 1.5e-19 99.8 84 58.3
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 1.5e-19 99.8 84 58.3
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 1.5e-19 99.8 84 58.3
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 1.5e-19 99.8 75 61.3
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 1.5e-19 99.8 66 72.7
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 2.5e-19 99.0 66 69.7
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 2.5e-19 99.0 75 65.3
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 3.3e-19 98.6 71 62.0
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 4.3e-19 98.2 67 73.1
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 2.1e-18 95.9 70 61.4
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 2.8e-18 95.5 70 67.1
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 2.8e-18 95.5 70 67.1
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 2.8e-18 95.5 70 67.1
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 2.8e-18 95.5 70 67.1
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 2.8e-18 95.5 70 67.1
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 2.8e-18 95.5 71 60.6
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 2.8e-18 95.5 70 67.1
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 3.6e-18 95.1 70 65.7
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 3.6e-18 95.1 70 65.7
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 3.6e-18 95.1 70 65.7
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 4.8e-18 94.7 70 67.1
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 4.8e-18 94.7 70 64.3
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 4.8e-18 94.7 70 64.3
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 4.8e-18 94.7 70 64.3
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 8.1e-18 94.0 70 65.7
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 8.1e-18 94.0 68 69.1
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 8.1e-18 94.0 69 66.7
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 2.4e-17 92.4 74 63.5
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 7.6e-16 87.4 68 57.4
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 9.9e-16 87.0 60 68.3
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 2.2e-15 85.9 51 80.4
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.8e-15 85.1 77 57.1
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 6.4e-15 84.3 65 63.1
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.9e-14 82.8 51 74.5
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 2.1e-13 79.3 69 62.3
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 2.1e-13 79.3 70 62.9
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 2.1e-13 79.3 70 62.9
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 2.1e-13 79.3 70 62.9
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 2.1e-13 79.3 70 62.9
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 2.7e-13 79.0 72 61.1
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 7.9e-13 77.4 49 75.5
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 1.8e-12 76.3 51 72.5
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.8e-12 76.3 51 72.5
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.8e-12 76.3 51 72.5
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 1.8e-12 76.3 51 72.5
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.3e-12 75.9 69 56.5
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 6.7e-12 74.3 64 51.6
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 6.7e-12 74.3 53 69.8
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 3.3e-11 72.0 57 64.9
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 2.1e-10 69.3 67 59.7
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 2.1e-10 69.3 67 59.7
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 8.1e-10 67.4 70 50.0
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 8.1e-10 67.4 60 50.0
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 1.4e-09 66.6 64 46.9
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 3.4e-08 62.0 56 57.1
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 9.9e-08 60.5 69 53.6
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 1.7e-07 59.7 39 79.5
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 1.7e-07 59.7 43 74.4
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 8.4e-07 57.4 42 73.8
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.2e-06 55.5 69 50.7
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.2e-06 55.5 33 81.8
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.2e-06 55.5 33 81.8
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 3.2e-06 55.5 33 81.8


User provided reference genes

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