Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 0.0e+00 1183.3 686 100.0
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.2e-103 381.7 712 43.7
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.4e-93 348.2 726 41.0
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 6.2e-89 332.8 723 38.5
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 4.5e-87 326.6 728 42.4
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.7e-86 324.7 722 44.2
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.9e-85 321.2 723 42.2
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.2e-84 318.5 720 41.1
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.6e-84 318.2 733 37.2
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.1e-84 317.8 719 42.6
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.0e-83 315.5 718 35.4
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.0e-83 315.5 731 44.2
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.3e-83 315.1 731 43.1
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.0e-83 313.9 728 44.1
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.1e-82 312.0 720 41.2
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.5e-82 311.6 720 42.5
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 3.3e-82 310.5 725 44.7
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.3e-82 310.5 720 42.9
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.3e-82 310.1 704 42.9
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 4.3e-82 310.1 725 44.0
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 4.3e-82 310.1 699 43.1
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 2.8e-81 307.4 716 42.2
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.8e-81 307.4 719 42.7
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.8e-81 306.6 719 42.7
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 8.2e-81 305.8 718 43.5
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.2e-81 305.8 716 43.2
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.1e-80 305.4 718 34.1
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.4e-80 305.1 722 41.7
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.1e-80 303.5 719 42.7
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 6.9e-80 302.8 732 39.9
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 9.0e-80 302.4 736 41.0
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.2e-79 302.0 716 42.9
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.2e-79 302.0 722 41.8
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 1.5e-79 301.6 723 43.8
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 4.5e-79 300.1 716 41.6
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 7.6e-79 299.3 710 40.3
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.0e-78 298.9 695 41.0
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.0e-78 298.9 684 42.8
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.0e-78 298.9 731 43.6
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.3e-78 298.5 709 42.9
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.7e-78 298.1 718 41.6
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.7e-78 298.1 729 37.6
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 3.8e-78 297.0 727 41.8
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 3.8e-78 297.0 716 41.5
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.1e-77 295.4 716 44.0
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.1e-77 295.4 721 42.3
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-77 295.4 720 42.2
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.9e-77 294.7 702 44.0
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.5e-77 294.3 730 41.5
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 3.2e-77 293.9 716 44.3
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 4.2e-77 293.5 707 39.0
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 4.2e-77 293.5 720 43.2
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 4.2e-77 293.5 696 43.0
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 5.5e-77 293.1 729 38.4
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 7.2e-77 292.7 728 40.7
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.2e-76 292.0 703 40.5
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.6e-76 290.4 734 42.2
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 3.6e-76 290.4 703 41.7
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 3.6e-76 290.4 719 42.1
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 3.6e-76 290.4 732 39.9
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 7.9e-76 289.3 731 41.9
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 7.9e-76 289.3 717 41.6
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 1.0e-75 288.9 646 44.3
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.4e-75 288.5 709 40.1
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.4e-75 288.5 713 39.7
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.3e-75 287.7 750 38.4
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 2.3e-75 287.7 725 41.8
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 5.1e-75 286.6 717 41.1
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 8.8e-75 285.8 709 42.2
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 8.8e-75 285.8 709 40.1
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.9e-74 284.6 703 40.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.9e-74 284.6 708 39.5
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.5e-74 284.3 708 39.1
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 2.5e-74 284.3 718 32.5
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 7.4e-74 282.7 708 39.4
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.7e-73 281.6 716 40.1
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.2e-73 281.2 707 40.7
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.2e-73 281.2 728 41.6
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 3.7e-73 280.4 731 39.7
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.1e-72 278.9 749 36.4
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 5.3e-72 276.6 643 44.2
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 9.1e-72 275.8 714 38.7
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 9.1e-72 275.8 722 40.0
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 9.1e-72 275.8 705 41.0
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.2e-71 275.4 727 39.2
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.2e-71 275.4 718 39.4
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.2e-71 275.4 706 42.1
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 4.5e-71 273.5 694 39.6
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.3e-70 271.9 713 31.8
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 2.9e-70 270.8 750 38.9
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 6.5e-70 269.6 733 40.7
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.4e-69 268.5 729 38.5
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.2e-69 267.3 534 34.6
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 7.2e-69 266.2 755 37.0
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 2.7e-68 264.2 719 31.2
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.0e-67 262.3 718 38.6
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.4e-67 261.9 706 42.2
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.8e-67 261.5 730 41.0
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 5.1e-67 260.0 721 37.3
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 8.8e-67 259.2 710 38.3
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.5e-66 258.5 730 40.3
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.1e-64 252.3 790 30.0
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.7e-62 245.0 653 41.7
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.6e-60 238.4 651 41.8
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 6.1e-60 236.5 717 34.2
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 5.2e-59 233.4 722 33.9
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.5e-58 231.9 701 31.1
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.7e-57 228.4 579 39.0
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.6e-55 221.1 727 31.1
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.2e-54 218.0 651 39.5
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.4e-53 212.6 453 34.0
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 3.3e-50 204.1 711 31.5
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 1.3e-49 202.2 568 28.3
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.3e-49 202.2 727 27.1
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.7e-47 194.5 702 27.9
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.2e-44 185.7 488 42.8
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.6e-44 185.3 544 40.4
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.1e-44 183.3 552 29.5
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 9.1e-40 169.5 272 55.9
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 4.5e-39 167.2 531 33.1
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.7e-39 166.4 536 37.9
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.0e-38 163.7 535 31.6
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 3.3e-37 161.0 539 39.5
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 1.2e-34 152.5 325 50.5
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 9.8e-34 149.4 525 28.2
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.4e-32 145.6 122 57.4
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 9.2e-32 142.9 248 45.2
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.6e-31 142.1 277 42.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 2.9e-30 137.9 254 57.9
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.8e-28 131.3 122 54.9
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 1.5e-26 125.6 346 36.7
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 7.5e-26 123.2 123 51.2
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 6.0e-23 113.6 126 49.2
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 7.8e-23 113.2 272 39.7
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-22 112.1 117 49.6
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 2.3e-22 111.7 367 28.9
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-20 105.9 472 24.6
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 3.1e-19 101.3 132 46.2
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 5.8e-18 97.1 139 54.0
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.7e-17 95.5 142 41.5
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.2e-17 95.1 133 53.4
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.2e-16 91.3 159 48.4
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.5e-15 87.8 206 39.8
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.9e-14 84.3 500 23.0
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 5.1e-14 84.0 281 27.0
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.9e-13 82.0 123 39.8
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.9e-13 82.0 139 36.7
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 1.6e-12 79.0 130 37.7
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.6e-12 79.0 110 44.5
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-10 72.0 99 45.5
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 2.2e-09 68.6 72 47.2
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 4.9e-09 67.4 141 33.3
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-08 65.5 74 48.6
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.1e-07 62.0 255 25.5
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 6.6e-06 57.0 71 43.7


User provided reference genes

Program Settings