Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 3.1e-168 595.1 312 100.0
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 7.2e-101 371.3 302 67.2
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 4.0e-99 365.5 304 67.4
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 4.1e-96 355.5 299 65.9
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 4.2e-85 318.9 318 58.2
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 8.3e-73 278.1 206 68.4
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 5.4e-72 275.4 222 61.3
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.2e-71 274.2 222 62.2
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 2.1e-68 263.5 227 59.0
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 2.8e-68 263.1 225 58.7
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 8.0e-68 261.5 243 56.0
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 3.1e-67 259.6 286 53.5
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 8.9e-67 258.1 249 55.0
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.2e-66 257.7 207 61.4
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 2.0e-66 256.9 229 55.5
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 2.0e-66 256.9 215 60.0
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 3.4e-66 256.1 246 55.7
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 7.5e-66 255.0 224 58.5
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 9.8e-66 254.6 216 60.2
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 2.2e-65 253.4 213 59.6
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.2e-65 253.4 209 61.7
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.2e-65 253.4 228 58.8
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 2.9e-65 253.1 292 49.3
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 3.7e-65 252.7 272 52.6
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 3.7e-65 252.7 229 58.1
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 3.7e-65 252.7 229 56.8
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 3.7e-65 252.7 230 55.2
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 6.4e-65 251.9 246 54.1
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 6.4e-65 251.9 214 57.9
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 6.4e-65 251.9 265 52.5
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 8.3e-65 251.5 225 56.4
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 8.3e-65 251.5 216 59.7
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 1.1e-64 251.1 231 56.3
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 2.4e-64 250.0 212 59.0
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.4e-64 250.0 213 58.7
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 2.4e-64 250.0 225 56.0
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 2.4e-64 250.0 213 57.3
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 4.1e-64 249.2 250 52.4
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 4.1e-64 249.2 247 53.8
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 4.1e-64 249.2 228 55.3
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 5.4e-64 248.8 216 56.9
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 9.2e-64 248.1 218 56.9
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 1.2e-63 247.7 244 53.7
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 1.6e-63 247.3 276 51.1
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.6e-63 247.3 239 53.6
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.6e-63 247.3 251 52.2
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 1.6e-63 247.3 222 55.9
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 2.0e-63 246.9 209 58.9
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 2.0e-63 246.9 217 56.7
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 2.0e-63 246.9 216 59.7
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 2.7e-63 246.5 244 53.3
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 2.7e-63 246.5 267 49.8
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 2.7e-63 246.5 220 57.3
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 3.5e-63 246.1 223 55.6
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 4.6e-63 245.7 268 49.6
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 7.8e-63 245.0 218 59.2
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.0e-62 244.6 230 55.2
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 1.0e-62 244.6 221 56.1
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 1.0e-62 244.6 282 50.0
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 1.3e-62 244.2 252 54.4
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 1.7e-62 243.8 210 60.0
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 2.3e-62 243.4 218 55.0
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 2.3e-62 243.4 219 54.8
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 3.0e-62 243.0 220 55.9
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 3.9e-62 242.7 219 55.7
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 3.9e-62 242.7 226 54.4
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 3.9e-62 242.7 245 53.9
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 3.9e-62 242.7 225 55.1
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 3.9e-62 242.7 225 55.1
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 6.6e-62 241.9 234 52.6
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 6.6e-62 241.9 250 54.8
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 6.6e-62 241.9 240 52.5
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 8.6e-62 241.5 221 55.7
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 8.6e-62 241.5 215 58.1
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 8.6e-62 241.5 318 49.1
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 1.5e-61 240.7 245 52.2
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 1.5e-61 240.7 219 57.1
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 1.9e-61 240.4 219 55.3
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 1.9e-61 240.4 218 55.0
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 5.6e-61 238.8 219 55.3
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.6e-60 237.3 208 56.2
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 2.1e-60 236.9 220 55.5
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.8e-60 236.5 211 55.0
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.8e-60 236.5 254 54.3
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 8.1e-60 235.0 269 49.1
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 1.1e-59 234.6 223 54.3
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.4e-59 234.2 310 46.1
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.8e-59 233.8 245 53.5
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 2.3e-59 233.4 300 46.7
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 4.0e-59 232.6 220 55.0
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 8.9e-59 231.5 313 46.6
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.5e-58 230.7 296 46.6
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 2.0e-58 230.3 299 44.1
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.9e-57 226.5 226 51.3
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 1.9e-56 223.8 194 57.7
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.9e-56 223.8 217 53.0
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.2e-56 223.0 202 55.4
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 9.2e-56 221.5 265 46.8
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 1.2e-55 221.1 256 48.4
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 4.6e-55 219.2 230 51.3
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.0e-54 218.0 268 47.0
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 1.3e-54 217.6 233 51.5
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 8.6e-54 214.9 261 47.1
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 8.6e-54 214.9 288 44.4
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.5e-53 214.2 203 53.2
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.6e-52 210.7 216 51.9
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 4.7e-52 209.1 195 53.8
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 1.2e-50 204.5 225 51.6
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 8.4e-49 198.4 212 49.5
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 5.6e-45 185.7 197 50.8
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.6e-44 184.1 216 47.2
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 4.7e-44 182.6 185 50.3
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 4.7e-44 182.6 185 50.3
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 2.6e-42 176.8 233 42.9
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 2.7e-39 166.8 171 52.6
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 6.0e-39 165.6 157 58.6
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.0e-38 164.9 150 57.3
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.5e-37 161.0 238 43.7
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 4.3e-37 159.5 178 48.9
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 3.1e-35 153.3 240 39.6
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 6.9e-35 152.1 131 55.7
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.9e-33 146.0 173 46.8
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 1.2e-31 141.4 205 41.5
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.6e-31 141.0 221 36.2
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.6e-21 105.1 131 47.3
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 4.0e-19 99.8 89 51.7
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 7.1e-16 89.0 58 62.1
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.3e-16 88.6 159 35.8
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 5.1e-14 82.8 58 67.2
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 1.8e-11 74.3 55 54.5
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 5.0e-09 66.2 52 59.6
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 1.9e-08 64.3 47 63.8
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.5e-08 62.8 82 40.2
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 1.0e-06 58.5 81 44.4
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 3.9e-06 56.6 47 63.8


User provided reference genes

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