Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 0.0e+00 1312.0 780 100.0
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 1.0e-228 797.3 770 66.9
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 4.9e-207 725.3 766 56.0
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.4e-206 723.8 662 64.8
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 1.7e-204 716.8 766 56.1
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 1.7e-204 716.8 766 56.1
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 3.0e-204 716.1 766 55.0
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 7.3e-203 711.4 766 56.0
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 3.6e-202 709.1 768 53.5
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 1.4e-201 707.2 765 53.9
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 3.1e-201 706.1 766 55.5
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 4.0e-201 705.7 768 54.2
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 5.3e-201 705.3 766 54.4
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 5.3e-201 705.3 766 54.4
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 5.3e-201 705.3 765 54.5
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 6.9e-201 704.9 760 56.4
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 3.4e-200 702.6 766 55.7
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 4.5e-200 702.2 766 54.0
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 1.7e-199 700.3 766 54.7
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 4.9e-199 698.7 766 54.4
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 1.1e-198 697.6 768 53.8
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 5.4e-198 695.3 766 53.8
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 7.1e-198 694.9 767 53.8
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 4.6e-197 692.2 766 53.8
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 7.9e-197 691.4 757 47.4
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 2.3e-196 689.9 748 54.8
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 3.0e-196 689.5 768 54.8
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 3.9e-196 689.1 765 54.1
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 3.9e-196 689.1 766 53.8
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 5.1e-196 688.7 767 52.8
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 1.1e-195 687.6 766 53.5
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 1.9e-195 686.8 766 46.9
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 3.3e-195 686.0 773 52.5
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 1.3e-194 684.1 766 53.0
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 1.6e-194 683.7 766 53.3
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 1.6e-194 683.7 767 54.8
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 1.6e-194 683.7 766 53.8
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 2.1e-194 683.3 759 53.4
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 2.1e-194 683.3 766 52.7
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 1.8e-193 680.2 767 54.4
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 1.8e-193 680.2 763 59.0
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 4.0e-193 679.1 760 52.9
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 4.0e-193 679.1 766 53.1
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 6.9e-193 678.3 766 53.3
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 9.0e-193 677.9 766 52.7
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 1.5e-192 677.2 766 52.2
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 2.0e-192 676.8 748 47.2
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 4.5e-192 675.6 766 52.6
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 7.6e-192 674.9 766 53.0
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 1.3e-191 674.1 766 52.2
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 1.3e-191 674.1 763 56.0
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.7e-191 673.7 766 53.4
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 2.9e-191 672.9 766 51.3
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 2.9e-191 672.9 765 52.8
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 4.9e-191 672.2 767 54.5
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 8.4e-191 671.4 766 51.3
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 1.4e-190 670.6 766 51.7
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 1.9e-190 670.2 766 51.2
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 5.5e-190 668.7 727 59.0
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 7.1e-190 668.3 767 52.8
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 9.3e-190 667.9 759 57.0
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 9.3e-190 667.9 774 51.7
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 1.6e-189 667.2 767 52.7
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 2.1e-189 666.8 766 51.7
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 2.7e-189 666.4 766 50.7
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 2.7e-189 666.4 766 50.7
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 2.7e-189 666.4 770 46.2
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 7.9e-189 664.8 840 43.8
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 1.3e-188 664.1 766 51.0
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.3e-188 664.1 770 51.2
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 3.0e-188 662.9 766 50.8
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 5.1e-188 662.1 759 51.3
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 8.7e-188 661.4 766 50.7
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 8.7e-188 661.4 772 50.5
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.1e-187 661.0 782 51.2
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 1.1e-187 661.0 768 52.2
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 2.5e-187 659.8 766 50.7
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 3.3e-187 659.4 761 55.3
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 9.6e-187 657.9 766 50.9
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 9.6e-187 657.9 791 51.1
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 1.4e-185 654.1 768 52.9
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 4.0e-185 652.5 763 51.9
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 3.8e-183 646.0 759 51.4
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 4.2e-182 642.5 810 47.7
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 1.6e-181 640.6 767 50.5
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 2.7e-181 639.8 720 55.0
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 4.6e-181 639.0 749 50.1
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 6.0e-181 638.6 769 54.5
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 7.9e-181 638.3 761 52.8
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 8.7e-180 634.8 761 53.0
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 4.8e-178 629.0 781 41.9
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 1.2e-176 624.4 810 43.1
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 1.3e-175 620.9 807 48.5
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 7.9e-173 611.7 768 50.1
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 1.7e-170 604.0 653 54.5
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 1.4e-169 600.9 782 49.2
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 4.5e-168 595.9 754 56.2
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 1.0e-167 594.7 678 54.6
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 1.1e-163 581.3 678 53.8
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 2.6e-163 580.1 678 52.4
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 5.7e-163 578.9 678 53.8
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 3.8e-159 566.2 766 47.5
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 1.1e-158 564.7 758 41.6
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 4.2e-158 562.8 798 46.1
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 8.2e-154 548.5 550 51.5
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 2.1e-149 533.9 561 49.6
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 4.7e-133 479.6 578 45.8
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 6.8e-132 475.7 524 59.0
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 1.7e-114 417.9 542 50.6
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 2.9e-106 390.6 402 47.5
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 2.5e-94 350.9 345 51.9
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 7.3e-94 349.4 447 43.0
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 7.6e-67 259.6 919 32.2
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 8.4e-66 256.1 275 45.8
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 3.2e-65 254.2 312 45.2
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 2.3e-63 248.1 338 60.1
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.9e-62 245.0 341 54.5
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 4.1e-60 237.3 786 28.1
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 1.2e-59 235.7 842 30.5
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 2.5e-54 218.0 205 52.7
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 7.7e-51 206.5 146 67.1
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 6.1e-48 196.8 797 30.2
SalBow6G1464 Salvia bowleyana HOM05D004755 ORTHO05D006137 2.2e-45 188.3 144 56.9
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.1e-44 186.0 121 72.7
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.0e-42 179.5 135 64.4
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 5.0e-42 177.2 266 53.4
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 4.4e-38 164.1 152 55.3
Cpa.g.sc62.109 Carica papaya HOM05D004755 ORTHO05D006137 1.1e-36 159.5 131 55.0
SEGI_26304 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.0e-34 152.9 123 56.1
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 7.0e-20 103.6 139 38.8
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 1.5e-17 95.9 107 43.9
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.9e-17 95.5 94 52.1
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 3.3e-17 94.7 85 50.6
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 3.3e-17 94.7 105 47.6
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 9.8e-14 83.2 89 48.3
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 2.9e-13 81.6 89 47.2
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 4.9e-13 80.9 92 46.7
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 6.3e-13 80.5 89 46.1
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 8.3e-13 80.1 88 46.6
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 1.6e-11 75.9 89 44.9
TAR376G1072 Trochodendron aralioides HOM05D004755 ORTHO05D006137 5.0e-10 70.9 65 49.2
SEGI_07035 Sequoiadendron giganteum HOM05D004755 ORTHO05D014145 3.3e-09 68.2 42 71.4
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 1.6e-08 65.9 44 63.6
CAN.G572.59 Capsicum annuum HOM05D000541 ORTHO05D000137 2.1e-08 65.5 40 72.5
CSS0014364 Camellia sinensis var. sinensis HOM05D000453 ORTHO05D000387 4.7e-08 64.3 134 30.6
PSO832G0487 Papaver somniferum HOM05D000453 ORTHO05D000387 6.2e-08 63.9 128 30.5
Haze_00389 Corylus avellana HOM05D004758 ORTHO05D006063 1.0e-07 63.2 148 31.8
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 2.3e-07 62.0 126 32.5
AagrBONN_evm.TU.Sc2ySwM_368.2777 Anthoceros agrestis HOM05D003769 ORTHO05D004521 3.1e-07 61.6 104 35.6
Cfa016059 Carpinus fangiana HOM05D004758 ORTHO05D006063 5.2e-07 60.8 148 31.1
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 6.8e-07 60.5 126 32.5
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 6.8e-07 60.5 126 31.7
CsaV3_2G000030 Cucumis sativus L. HOM05D004755 ORTHO05D006137 6.8e-07 60.5 46 63.0
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 8.9e-07 60.1 67 46.3
CDE01G0336 Ceratophyllum demersum HOM05D003769 ORTHO05D004521 1.5e-06 59.3 104 33.7
MELO3C002081.2 Cucumis melo HOM05D003769 ORTHO05D004521 1.5e-06 59.3 104 34.6
Potri.012G060800 Populus trichocarpa HOM05D003769 ORTHO05D004521 1.5e-06 59.3 104 33.7
AUR62029854 Chenopodium quinoa HOM05D003769 ORTHO05D004521 2.0e-06 58.9 104 34.6
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 2.0e-06 58.9 143 31.5
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 2.6e-06 58.5 104 35.6
COL.COLO4_28008 Corchorus olitorius HOM05D001335 ORTHO05D001184 2.6e-06 58.5 145 28.3
MCO16G635 Micromonas commoda HOM05D042708 ORTHO05D000301 2.6e-06 58.5 150 29.3
Sp4g15650 Schrenkiella parvula HOM05D003335 ORTHO05D003853 2.6e-06 58.5 174 26.4
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 4.4e-06 57.8 104 33.7
Oeu017598.1 Olea europaea HOM05D000453 ORTHO05D000387 4.4e-06 57.8 130 29.2
Oeu018840.1 Olea europaea HOM05D000453 ORTHO05D000387 4.4e-06 57.8 136 27.9
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 5.8e-06 57.4 104 34.6
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 5.8e-06 57.4 104 32.7
Dinv40419 Davidia involucrata HOM05D003769 ORTHO05D004521 5.8e-06 57.4 104 34.6
Thhalv10016510m.g Eutrema salsugineum HOM05D003335 ORTHO05D003853 5.8e-06 57.4 174 26.4
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 5.8e-06 57.4 104 32.7
Sabra12G0044000 Salix brachista HOM05D003769 ORTHO05D004521 5.8e-06 57.4 104 32.7
Aa31LG1G20360 Aethionema arabicum HOM05D003335 ORTHO05D003853 7.5e-06 57.0 174 24.7
Aa31LG5G3970 Aethionema arabicum HOM05D003335 ORTHO05D003853 7.5e-06 57.0 174 25.3
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 7.5e-06 57.0 44 59.1
CsaV3_1G006540 Cucumis sativus L. HOM05D003769 ORTHO05D004521 7.5e-06 57.0 104 33.7
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 7.5e-06 57.0 104 31.7
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 7.5e-06 57.0 104 34.6
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 7.5e-06 57.0 104 32.7
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 9.8e-06 56.6 104 33.7


User provided reference genes

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