Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 3.6e-223 778.1 439 100.0
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 5.8e-173 611.3 437 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 4.2e-171 605.1 439 69.9
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 9.0e-158 560.8 429 73.9
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 4.9e-156 555.1 429 73.9
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 4.3e-152 542.0 432 72.5
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 3.7e-151 538.9 432 72.2
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 6.3e-151 538.1 432 71.8
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 8.2e-151 537.7 429 71.1
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 4.1e-150 535.4 429 71.3
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 6.9e-150 534.6 428 71.5
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 1.5e-149 533.5 429 71.1
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 2.0e-149 533.1 430 71.2
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 3.4e-149 532.3 429 71.6
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 7.7e-149 531.2 432 71.1
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 7.7e-149 531.2 432 71.1
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 1.7e-148 530.0 432 70.1
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 2.2e-148 529.6 429 71.1
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 2.2e-148 529.6 432 69.4
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 5.0e-148 528.5 436 68.8
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 8.5e-148 527.7 431 70.8
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 1.1e-147 527.3 429 69.9
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 1.1e-147 527.3 430 70.2
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 2.5e-147 526.2 432 69.2
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 3.2e-147 525.8 434 70.0
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 2.1e-146 523.1 430 68.8
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 1.4e-145 520.4 430 68.8
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 6.7e-145 518.1 451 67.6
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 1.1e-144 517.3 431 68.2
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 1.1e-144 517.3 426 69.5
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 9.7e-144 514.2 442 67.4
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 1.7e-143 513.5 429 69.2
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 2.2e-143 513.1 434 68.2
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 2.2e-143 513.1 432 69.2
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 3.7e-143 512.3 432 67.8
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 1.1e-142 510.8 409 69.4
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 5.3e-142 508.4 455 57.1
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 9.1e-142 507.7 432 66.7
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 1.5e-141 506.9 485 60.0
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 3.4e-141 505.8 429 65.7
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 5.9e-141 505.0 434 62.9
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 1.7e-140 503.4 442 57.5
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 1.7e-140 503.4 432 66.2
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 1.1e-139 500.7 430 68.4
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 1.7e-135 486.9 438 68.3
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 3.7e-135 485.7 409 67.2
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 4.8e-135 485.3 432 66.0
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 6.3e-135 485.0 425 66.1
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 8.2e-135 484.6 415 67.7
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 1.4e-134 483.8 430 66.5
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 2.4e-134 483.0 430 63.3
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 1.2e-133 480.7 430 61.4
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 5.9e-133 478.4 430 65.3
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 1.0e-132 477.6 428 69.4
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 1.7e-132 476.9 431 56.6
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 2.9e-132 476.1 439 63.6
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 2.9e-132 476.1 553 47.7
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 4.2e-131 472.2 433 66.7
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 6.1e-130 468.4 463 54.6
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 1.8e-129 466.8 432 63.4
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 2.3e-129 466.5 458 62.7
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 3.9e-129 465.7 592 44.4
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 8.8e-129 464.5 431 64.5
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 1.1e-128 464.2 430 63.7
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 2.6e-128 463.0 430 63.3
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 2.6e-128 463.0 430 64.2
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 1.7e-127 460.3 431 54.1
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 2.8e-127 459.5 430 62.6
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 4.8e-127 458.8 430 64.2
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 8.2e-127 458.0 399 58.4
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 3.1e-126 456.1 432 65.3
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 2.0e-125 453.4 444 61.7
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 1.0e-124 451.1 430 63.3
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 2.7e-122 443.0 340 74.1
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 4.0e-121 439.1 398 65.1
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 2.0e-120 436.8 440 61.4
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 2.6e-120 436.4 431 61.7
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 8.3e-119 431.4 434 61.3
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 1.4e-118 430.6 434 61.3
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 2.7e-117 426.4 416 52.4
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 4.5e-117 425.6 455 51.0
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 2.9e-116 422.9 416 52.2
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 1.5e-115 420.6 386 65.5
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 6.1e-114 415.2 429 53.6
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 6.3e-111 405.2 463 56.4
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 6.6e-108 395.2 266 71.8
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 2.5e-107 393.3 436 50.0
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 4.2e-107 392.5 327 60.6
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 4.9e-103 379.0 440 54.5
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 2.8e-90 336.7 429 55.5
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 1.8e-89 334.0 429 50.6
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 1.0e-76 291.6 262 58.8
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 6.2e-74 282.3 327 48.0
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 1.4e-73 281.2 294 62.6
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 2.5e-59 233.8 240 54.2
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 2.1e-58 230.7 220 67.7
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 3.6e-58 229.9 145 75.2
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 9.0e-57 225.3 348 39.1
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 6.0e-53 212.6 408 35.3
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 3.1e-49 200.3 189 63.5
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 4.5e-48 196.4 188 73.9
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 2.0e-40 171.0 161 73.3
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 4.1e-33 146.7 147 72.8
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 3.0e-28 130.6 114 54.4
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 2.4e-25 120.9 177 42.9
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 5.0e-23 113.2 87 64.4
SEGI_19563 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 3.2e-22 110.5 63 82.5
CBR_g71889 Chara braunii HOM05D006809 ORTHO05D008609 6.1e-21 106.3 76 67.1
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 3.9e-20 103.6 146 34.2
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 8.8e-20 102.4 103 56.3
MD14G1214700 Malus domestica HOM05D006809 ORTHO05D008609 1.1e-19 102.1 125 47.2
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 2.4e-17 94.4 144 34.0
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 5.3e-17 93.2 116 38.8
arahy.Tifrunner.gnm1.ann1.BJ4A4M Arachis hypogaea HOM05D006809 ORTHO05D008609 3.8e-15 87.0 71 59.2
Solyc12g038523.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 3.2e-14 84.0 110 45.5
CAN.G131.10 Capsicum annuum HOM05D006809 ORTHO05D008609 4.0e-12 77.0 122 42.6
Thecc.03G286100 Theobroma cacao HOM05D006809 ORTHO05D008609 7.5e-11 72.8 50 66.0
MD14G1214400 Malus domestica HOM05D006809 ORTHO05D008609 9.7e-11 72.4 39 76.9
DCAR_024291 Daucus carota HOM05D003335 ORTHO05D003853 8.2e-10 69.3 181 26.0
AT3G49180 Arabidopsis thaliana HOM05D002332 ORTHO05D002509 1.4e-09 68.6 197 27.9
Psat1g128400 Pisum sativum HOM05D006809 ORTHO05D008609 1.6e-08 65.1 51 66.7
HanXRQChr11g0342461 Helianthus annuus HOM05D003335 ORTHO05D003853 3.5e-08 63.9 212 24.1
Medtr2g061440 Medicago truncatula HOM05D002527 ORTHO05D001267 3.5e-08 63.9 42 61.9
MSTRG.9861 Avicennia marina HOM05D003335 ORTHO05D003853 5.9e-08 63.2 185 27.0
Lsat_1_v5_gn_1_75641 Lactuca sativa HOM05D003335 ORTHO05D003853 7.7e-08 62.8 212 23.6
Prupe.4G049300 Prunus persica HOM05D000836 ORTHO05D000709 7.7e-08 62.8 198 27.3
RcHm_v2.0_Chr4g0395291 Rosa chinensis HOM05D003335 ORTHO05D003853 7.7e-08 62.8 181 26.0
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 1.0e-07 62.4 186 28.0
Haze_18030 Corylus avellana HOM05D002332 ORTHO05D002509 1.0e-07 62.4 202 24.8
Lj4C739G4 Lonicera japonica HOM05D000921 ORTHO05D004782 1.3e-07 62.0 203 28.1
QL05p041295 Quercus lobata HOM05D000836 ORTHO05D000709 1.3e-07 62.0 197 25.4
SalBow3G1035 Salvia bowleyana HOM05D003335 ORTHO05D003853 1.3e-07 62.0 214 24.3
Atru.chr4.1725 Acer truncatum HOM05D000836 ORTHO05D000709 1.7e-07 61.6 231 24.2
THA.LOC104801044 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 2.2e-07 61.2 185 26.5
FAN12G3742 Fragaria x ananassa HOM05D003335 ORTHO05D003853 2.9e-07 60.8 178 25.8
FvH4_4g04520 Fragaria vesca HOM05D003335 ORTHO05D003853 3.8e-07 60.5 178 25.8
FAN22G1996 Fragaria x ananassa HOM05D003335 ORTHO05D003853 3.8e-07 60.5 178 25.8
FAN17G2432 Fragaria x ananassa HOM05D003335 ORTHO05D003853 5.0e-07 60.1 178 25.8
Lalb_Chr13g0302231 Lupinus albus HOM05D000836 ORTHO05D000709 5.0e-07 60.1 194 25.3
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 5.0e-07 60.1 227 29.1
Glyma.05G011800 Glycine max HOM05D000836 ORTHO05D000709 6.5e-07 59.7 215 25.6
Medtr1g050340 Medicago truncatula HOM05D000836 ORTHO05D000709 6.5e-07 59.7 210 23.8
PGSC0003DMG400015323 Solanum tuberosum HOM05D000836 ORTHO05D000709 6.5e-07 59.7 173 26.6
Eucgr.H00801 Eucalyptus grandis HOM05D000836 ORTHO05D000709 8.5e-07 59.3 187 26.2
MD05G1176000 Malus domestica HOM05D000836 ORTHO05D000709 8.5e-07 59.3 285 26.0
Nitab4.5_0000287g0170 Nicotiana tabacum HOM05D002332 ORTHO05D002509 8.5e-07 59.3 208 24.0
Zm00001eb325010 Zea mays HOM05D002943 ORTHO05D002685 8.5e-07 59.3 227 29.1
Duzib138G1320 Durio zibethinus HOM05D000836 ORTHO05D000709 1.1e-06 58.9 183 26.2
Dinv41562 Davidia involucrata HOM05D000836 ORTHO05D000709 1.9e-06 58.2 196 27.0
Os07g0572000 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 1.9e-06 58.2 215 27.9
PSO541G3218 Papaver somniferum HOM05D002332 ORTHO05D002509 1.9e-06 58.2 203 24.1
Glyma.17G120000 Glycine max HOM05D000836 ORTHO05D000709 2.5e-06 57.8 194 24.2
Manes.03G148800 Manihot esculenta HOM05D000836 ORTHO05D000709 2.5e-06 57.8 190 24.7
PSO675G4923 Papaver somniferum HOM05D002332 ORTHO05D002509 2.5e-06 57.8 203 24.1
Ciclev10004358m.g Citrus clementina HOM05D000836 ORTHO05D000709 3.2e-06 57.4 221 24.0
Hma1.2p1_0736F.1_g210710 Hydrangea macrophylla HOM05D000836 ORTHO05D000709 3.2e-06 57.4 262 23.7
Lj1g0022487 Lotus japonicus HOM05D000836 ORTHO05D000709 3.2e-06 57.4 210 23.3
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 3.2e-06 57.4 218 22.5
vmacro21345 Vaccinium macrocarpon HOM05D000921 ORTHO05D004782 3.2e-06 57.4 204 27.0
FAN15G0333 Fragaria x ananassa HOM05D002332 ORTHO05D002509 4.2e-06 57.0 208 24.5
Psat0s4552g0080 Pisum sativum HOM05D002332 ORTHO05D002509 4.2e-06 57.0 200 23.0
Rhsim06G0071200 Rhododendron simsii HOM05D000921 ORTHO05D004782 4.2e-06 57.0 204 27.5
MD10G1165100 Malus domestica HOM05D000836 ORTHO05D000709 5.5e-06 56.6 296 25.0
Nn1g04830 Nelumbo nucifera HOM05D002332 ORTHO05D002509 5.5e-06 56.6 195 23.1
Peaxi162Scf00458g00325 Petunia axillaris HOM05D002332 ORTHO05D002509 5.5e-06 56.6 203 25.1
Glyma.10G102400 Glycine max HOM05D000836 ORTHO05D000709 7.2e-06 56.2 210 23.3
Gorai.010G256200 Gossypium raimondii HOM05D000836 ORTHO05D000709 7.2e-06 56.2 173 23.7
Medtr4g088675 Medicago truncatula HOM05D000836 ORTHO05D000709 7.2e-06 56.2 125 30.4
Potri.014G027200 Populus trichocarpa HOM05D002332 ORTHO05D002509 7.2e-06 56.2 202 23.8
Prupe.8G203500 Prunus persica HOM05D000836 ORTHO05D000709 7.2e-06 56.2 197 24.9
Thecc.04G205800 Theobroma cacao HOM05D000836 ORTHO05D000709 7.2e-06 56.2 213 24.4
Aqoxy7G03782 Aquilegia oxysepala HOM05D000836 ORTHO05D000709 9.4e-06 55.8 218 27.5
COL.COLO4_10279 Corchorus olitorius HOM05D000836 ORTHO05D000709 9.4e-06 55.8 201 23.9
Nn4g24734 Nelumbo nucifera HOM05D002332 ORTHO05D002509 9.4e-06 55.8 202 23.3


User provided reference genes

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