Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 3.4e-244 848.2 531 100.0
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 7.3e-69 265.8 447 37.1
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 4.7e-68 263.1 447 38.0
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 4.7e-68 263.1 451 38.1
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.8e-67 261.2 447 37.8
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.2e-66 258.5 444 38.5
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 1.2e-66 258.5 451 36.6
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 2.6e-66 257.3 500 36.2
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.3e-65 255.0 451 36.8
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 1.7e-65 254.6 445 37.8
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 8.3e-65 252.3 458 38.0
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.8e-64 251.1 451 36.8
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 4.1e-64 250.0 458 36.5
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 4.1e-64 250.0 439 38.0
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 4.1e-64 250.0 447 37.4
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 5.4e-64 249.6 533 35.6
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 5.4e-64 249.6 440 37.0
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 1.6e-63 248.1 450 38.9
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.6e-63 248.1 455 35.8
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 2.0e-63 247.7 436 37.8
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 2.7e-63 247.3 448 35.5
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 7.8e-63 245.7 451 36.1
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.7e-62 244.6 445 36.9
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 3.9e-62 243.4 435 36.6
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 6.6e-62 242.7 504 35.9
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 3.3e-61 240.4 444 37.4
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 3.3e-61 240.4 450 37.3
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 3.3e-61 240.4 446 36.5
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 5.6e-61 239.6 447 35.6
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 9.5e-61 238.8 463 35.9
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.2e-60 238.4 508 34.4
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.2e-60 238.4 515 35.1
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.1e-60 237.7 458 33.6
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 2.8e-60 237.3 436 38.1
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 3.6e-60 236.9 489 35.0
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 3.6e-60 236.9 517 33.8
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 6.2e-60 236.1 516 33.9
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 6.2e-60 236.1 447 35.8
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 6.2e-60 236.1 441 37.4
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 8.0e-60 235.7 509 33.8
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 8.0e-60 235.7 448 38.4
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 8.0e-60 235.7 460 36.1
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 1.4e-59 235.0 443 40.6
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.4e-59 235.0 444 36.0
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.8e-59 234.6 516 33.9
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.8e-59 234.6 446 35.4
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.8e-59 234.6 456 33.6
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 2.3e-59 234.2 480 32.9
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 4.0e-59 233.4 446 35.2
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 5.2e-59 233.0 448 35.7
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 6.8e-59 232.6 444 36.0
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.8e-59 232.6 442 35.5
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 6.8e-59 232.6 455 34.3
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 2.0e-58 231.1 518 33.0
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.6e-58 230.7 437 35.7
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 4.4e-58 229.9 459 33.6
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 4.4e-58 229.9 450 35.1
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 7.5e-58 229.2 422 37.4
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 9.8e-58 228.8 424 35.4
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 9.8e-58 228.8 452 33.8
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 9.8e-58 228.8 508 34.3
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.7e-57 228.0 531 33.7
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 4.9e-57 226.5 515 33.8
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 6.4e-57 226.1 525 33.1
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.1e-56 225.3 520 33.1
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.9e-56 224.6 520 33.7
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.9e-56 224.6 521 33.4
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 4.1e-56 223.4 440 33.4
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.2e-55 221.9 442 34.4
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.6e-55 221.5 453 33.3
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 2.0e-55 221.1 496 33.9
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.0e-55 221.1 454 32.6
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 2.7e-55 220.7 450 33.8
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 2.7e-55 220.7 506 33.4
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.5e-55 220.3 445 34.8
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 6.0e-55 219.5 402 36.6
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.3e-54 218.4 411 38.7
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 5.0e-54 216.5 436 34.9
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 6.6e-54 216.1 507 32.9
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 3.3e-53 213.8 456 32.0
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 1.2e-52 211.8 454 33.5
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 4.7e-52 209.9 456 32.2
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 4.7e-52 209.9 465 31.8
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.3e-51 207.6 399 34.6
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 4.0e-51 206.8 182 56.0
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 8.9e-51 205.7 194 52.6
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.2e-49 201.1 422 33.4
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.4e-49 199.5 187 52.9
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.4e-48 198.4 184 53.3
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.9e-48 198.0 181 55.2
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 5.4e-48 196.4 389 34.4
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 4.3e-45 186.8 466 31.3
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.2e-44 185.3 181 49.7
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 1.1e-43 182.2 180 50.0
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.1e-43 182.2 418 31.6
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 2.3e-43 181.0 181 49.2
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 9.9e-42 175.6 422 31.8
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 3.8e-41 173.7 172 51.7
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.8e-41 173.7 181 50.3
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 6.4e-41 172.9 433 32.8
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.1e-39 167.9 185 45.9
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.7e-38 164.9 187 43.9
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.3e-38 164.5 400 32.0
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 5.1e-38 163.3 439 30.8
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 8.6e-38 162.5 165 50.9
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 4.3e-37 160.2 185 44.3
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 5.6e-37 159.8 165 50.9
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 7.3e-37 159.5 165 50.9
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.8e-36 157.5 187 44.9
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.8e-35 154.8 187 42.8
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 9.9e-34 149.1 181 43.6
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 4.9e-33 146.7 149 51.0
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.9e-32 144.8 141 49.6
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 2.1e-31 141.4 198 39.4
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 3.5e-31 140.6 181 41.4
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 4.6e-31 140.2 198 38.9
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 4.6e-31 140.2 198 38.9
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.3e-30 138.7 165 44.8
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.7e-30 138.3 362 30.9
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.5e-29 135.2 163 45.4
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 4.3e-29 133.7 181 42.0
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 7.3e-29 132.9 122 56.6
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 2.8e-28 131.0 188 39.4
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 6.9e-27 126.3 122 54.1
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 9.0e-27 125.9 438 27.4
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 4.5e-26 123.6 340 30.0
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 5.8e-26 123.2 200 32.5
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 9.9e-26 122.5 356 28.4
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.3e-22 112.1 321 29.3
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 3.0e-22 110.9 312 30.4
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 6.7e-22 109.8 187 34.8
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 8.7e-22 109.4 321 28.3
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 9.0e-19 99.4 142 41.5
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 3.8e-17 94.0 77 53.2
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.1e-16 92.4 124 44.4
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 2.4e-16 91.3 98 44.9
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 4.2e-16 90.5 173 32.4
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.9e-13 81.6 152 38.8
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 6.2e-12 76.6 96 40.6
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.8e-11 75.1 58 60.3
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.9e-11 73.2 62 51.6
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 7.6e-10 69.7 180 31.7
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.0e-09 69.3 65 53.8
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.3e-09 68.9 98 34.7
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 1.4e-08 65.5 99 33.3
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 1.9e-08 65.1 44 61.4


User provided reference genes

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