Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0081s0079 Marchantia polymorpha HOM05D005783 ORTHO05D007042 3.3e-32 141.0 65 100.0
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 7.4e-24 113.2 65 76.9
MCO03G241 Micromonas commoda HOM05D005783 ORTHO05D007042 3.7e-23 110.9 60 80.0
Pp3c19_4700 Physcomitrium patens HOM05D005783 ORTHO05D007042 6.2e-23 110.2 65 78.5
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 3.1e-22 107.8 65 75.4
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 1.5e-21 105.5 65 73.8
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 1.5e-21 105.5 65 73.8
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 1.5e-21 105.5 65 72.3
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 2.0e-21 105.1 65 70.8
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 2.6e-21 104.8 65 72.3
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 2.6e-21 104.8 65 70.8
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 2.6e-21 104.8 65 72.3
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 2.6e-21 104.8 65 72.3
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 2.6e-21 104.8 65 72.3
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 2.6e-21 104.8 65 72.3
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 2.6e-21 104.8 65 72.3
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 2.6e-21 104.8 65 72.3
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 2.6e-21 104.8 65 72.3
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 3.4e-21 104.4 65 73.8
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 4.5e-21 104.0 65 72.3
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 4.5e-21 104.0 65 70.8
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 5.8e-21 103.6 65 72.3
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 5.8e-21 103.6 65 72.3
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 5.8e-21 103.6 65 72.3
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 7.6e-21 103.2 61 73.8
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 7.6e-21 103.2 65 69.2
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 7.6e-21 103.2 65 72.3
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 7.6e-21 103.2 65 72.3
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 1.0e-20 102.8 65 70.8
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 1.3e-20 102.4 61 73.8
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 69.2
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 1.3e-20 102.4 65 70.8
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 1.7e-20 102.1 65 72.3
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 1.7e-20 102.1 65 70.8
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 1.7e-20 102.1 65 70.8
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 1.7e-20 102.1 65 70.8
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 1.7e-20 102.1 65 70.8
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 70.8
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 70.8
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 69.2
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 70.8
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 70.8
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 69.2
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 70.8
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 2.2e-20 101.7 65 70.8
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 2.9e-20 101.3 60 75.0
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 2.9e-20 101.3 65 69.2
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 2.9e-20 101.3 65 69.2
Medtr7g097110 Medicago truncatula HOM05D005783 ORTHO05D007042 2.9e-20 101.3 65 72.3
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 2.9e-20 101.3 65 70.8
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 2.9e-20 101.3 65 70.8
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 3.8e-20 100.9 65 69.2
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 3.8e-20 100.9 65 69.2
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 3.8e-20 100.9 65 72.3
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 3.8e-20 100.9 65 70.8
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 3.8e-20 100.9 65 69.2
Cre05.g237700 Chlamydomonas reinhardtii HOM05D005783 ORTHO05D007042 4.9e-20 100.5 60 73.3
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 69.2
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 69.2
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 4.9e-20 100.5 65 70.8
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 6.5e-20 100.1 65 69.2
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 6.5e-20 100.1 65 69.2
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 6.5e-20 100.1 65 69.2
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 6.5e-20 100.1 65 69.2
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 6.5e-20 100.1 65 69.2
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 6.5e-20 100.1 65 69.2
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 6.5e-20 100.1 65 69.2
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 1.1e-19 99.4 65 69.2
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 1.4e-19 99.0 65 69.2
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 1.4e-19 99.0 58 77.6
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 1.4e-19 99.0 65 69.2
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 2.5e-19 98.2 60 73.3
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 2.5e-19 98.2 65 69.2
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 3.2e-19 97.8 65 69.2
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 4.2e-19 97.4 65 69.2
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 4.2e-19 97.4 65 69.2
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 4.2e-19 97.4 65 69.2
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 4.2e-19 97.4 65 69.2
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 4.2e-19 97.4 65 69.2
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.2e-19 97.4 65 67.7
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 4.2e-19 97.4 65 67.7
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 4.2e-19 97.4 65 70.8
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 5.5e-19 97.1 65 70.8
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 5.5e-19 97.1 65 69.2
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 7.1e-19 96.7 65 69.2
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 7.1e-19 96.7 65 69.2
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 7.1e-19 96.7 65 69.2
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 7.1e-19 96.7 65 69.2
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 9.3e-19 96.3 65 69.2
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 9.3e-19 96.3 65 69.2
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 9.3e-19 96.3 65 69.2
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 9.3e-19 96.3 65 69.2
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 9.3e-19 96.3 65 69.2
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.2e-18 95.9 65 66.2
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 2.1e-18 95.1 65 69.2
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 2.1e-18 95.1 65 69.2
A07p00260 Brassica napus HOM05D005783 ORTHO05D007042 2.1e-18 95.1 65 69.2
BraA07t27818Z Brassica rapa HOM05D005783 ORTHO05D007042 2.1e-18 95.1 65 69.2
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 2.1e-18 95.1 65 69.2
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 2.1e-18 95.1 65 69.2
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 2.7e-18 94.7 62 67.7
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 3.5e-18 94.4 61 68.9
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 3.5e-18 94.4 65 67.7
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 4.6e-18 94.0 60 71.7
PRCOL_00002782 Prasinoderma coloniale HOM05D005783 ORTHO05D007042 6.0e-18 93.6 61 67.2
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 1.0e-17 92.8 65 67.7
BcaC06g36737 Brassica carinata HOM05D005783 ORTHO05D007042 1.0e-17 92.8 65 67.7
C07p00540 Brassica napus HOM05D005783 ORTHO05D007042 1.0e-17 92.8 65 67.7
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 8.7e-17 89.7 83 55.4
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 1.5e-16 89.0 74 59.5
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 3.3e-16 87.8 87 52.9
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 4.8e-15 84.0 87 51.7
BolC7t40500H Brassica oleracea HOM05D005783 ORTHO05D007042 1.4e-14 82.4 78 55.1
BolC9t54438H Brassica oleracea HOM05D005783 ORTHO05D007042 3.1e-14 81.3 93 48.4
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.2e-13 79.3 99 45.5
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 6.5e-12 73.6 47 70.2
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 1.4e-11 72.4 116 39.7
MELO3C033129.2 Cucumis melo HOM05D005783 ORTHO05D007042 5.5e-11 70.5 59 61.0
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 5.5e-11 70.5 49 65.3
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 1.6e-10 68.9 47 66.0
Duzib192G0414 Durio zibethinus HOM05D005783 ORTHO05D007042 8.7e-09 63.2 89 41.6
BcaC03g16291 Brassica carinata HOM05D005783 ORTHO05D007042 7.4e-08 60.1 49 59.2
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.3e-07 59.3 65 49.2
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 4.1e-06 54.3 38 63.2
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 5.3e-06 53.9 31 71.0
unitig_0.g159 Utricularia gibba HOM05D005783 ORTHO05D007042 5.3e-06 53.9 47 51.1


User provided reference genes

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