Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 7.6e-43 176.8 91 100.0
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 6.3e-21 104.0 56 96.4
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 4.5e-19 97.8 52 96.2
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.3e-13 79.7 51 74.5
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 1.3e-13 79.7 51 74.5
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 4.8e-13 77.8 51 74.5
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 4.8e-13 77.8 51 72.5
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.1e-12 76.6 51 68.6
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 1.4e-12 76.3 84 46.4
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.4e-12 76.3 51 70.6
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 1.8e-12 75.9 51 68.6
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 1.8e-12 75.9 51 68.6
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 1.8e-12 75.9 51 68.6
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 1.8e-12 75.9 51 68.6
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 1.8e-12 75.9 51 68.6
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 1.8e-12 75.9 51 68.6
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 1.8e-12 75.9 51 68.6
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.8e-12 75.9 51 70.6
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 1.8e-12 75.9 51 70.6
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 1.8e-12 75.9 51 68.6
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 2.4e-12 75.5 51 70.6
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 2.4e-12 75.5 51 68.6
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 4.1e-12 74.7 51 68.6
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 4.1e-12 74.7 51 66.7
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 4.1e-12 74.7 49 67.3
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 4.1e-12 74.7 51 68.6
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 4.1e-12 74.7 51 68.6
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 4.1e-12 74.7 51 68.6
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 4.1e-12 74.7 51 68.6
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 4.1e-12 74.7 51 68.6
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 5.3e-12 74.3 51 68.6
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 5.3e-12 74.3 51 66.7
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 5.3e-12 74.3 51 64.7
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 6.9e-12 73.9 51 64.7
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 6.9e-12 73.9 51 66.7
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 6.9e-12 73.9 51 66.7
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 6.9e-12 73.9 51 64.7
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 6.9e-12 73.9 51 66.7
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 9.1e-12 73.6 51 70.6
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 1.2e-11 73.2 51 64.7
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 1.2e-11 73.2 51 68.6
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 1.2e-11 73.2 51 68.6
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 1.2e-11 73.2 51 66.7
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 1.5e-11 72.8 51 64.7
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 1.5e-11 72.8 51 62.7
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.5e-11 72.8 51 66.7
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 1.5e-11 72.8 51 64.7
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 1.5e-11 72.8 51 66.7
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 1.5e-11 72.8 51 62.7
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 2.0e-11 72.4 51 66.7
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 2.0e-11 72.4 51 62.7
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 2.0e-11 72.4 51 64.7
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 2.0e-11 72.4 51 64.7
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 2.0e-11 72.4 50 68.0
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 2.0e-11 72.4 51 66.7
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 2.6e-11 72.0 51 66.7
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 2.6e-11 72.0 51 64.7
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 2.6e-11 72.0 51 62.7
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 2.6e-11 72.0 51 66.7
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 2.6e-11 72.0 51 66.7
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 60.8
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 60.8
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 64.7
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 64.7
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 62.7
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 62.7
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 62.7
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 60.8
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 64.7
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 64.7
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 62.7
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 66.7
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 3.4e-11 71.6 51 62.7
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 4.5e-11 71.2 51 60.8
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 4.5e-11 71.2 51 60.8
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 5.9e-11 70.9 51 58.8
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 5.9e-11 70.9 51 58.8
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 5.9e-11 70.9 51 62.7
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 5.9e-11 70.9 51 62.7
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 7.7e-11 70.5 51 62.7
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 7.7e-11 70.5 51 62.7
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 7.7e-11 70.5 51 60.8
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 7.7e-11 70.5 51 62.7
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.0e-10 70.1 51 60.8
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.7e-10 69.3 51 62.7
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 1.7e-10 69.3 51 60.8
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 2.2e-10 68.9 51 60.8
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 2.2e-10 68.9 51 58.8
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.2e-10 68.9 51 58.8
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 2.2e-10 68.9 51 64.7
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 2.9e-10 68.6 51 60.8
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 2.9e-10 68.6 51 58.8
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 3.8e-10 68.2 51 58.8
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 5.0e-10 67.8 47 66.0
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.4e-09 66.2 52 61.5
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 1.9e-09 65.9 51 56.9
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.5e-09 65.5 43 69.8
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.5e-09 65.5 43 69.8
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.2e-09 65.1 43 67.4
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 4.2e-09 64.7 51 60.8
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 5.5e-09 64.3 51 56.9
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.2e-09 63.9 43 67.4
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 6.1e-08 60.8 51 54.9


User provided reference genes

Program Settings