Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 0.0e+00 1135.6 588 100.0
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 9.3e-134 481.5 545 50.1
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 5.9e-112 409.1 460 50.4
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 7.7e-112 408.7 444 50.2
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 1.7e-111 407.5 456 50.4
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 8.5e-111 405.2 436 52.8
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 1.4e-110 404.4 436 52.5
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.9e-110 404.1 489 47.6
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 2.5e-110 403.7 460 50.0
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 2.5e-110 403.7 457 50.5
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 4.2e-110 402.9 453 50.1
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 9.4e-110 401.7 458 50.0
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 1.2e-109 401.4 503 47.7
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.6e-109 401.0 503 48.5
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 6.1e-109 399.1 457 49.9
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 6.1e-109 399.1 526 45.2
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 7.9e-109 398.7 459 50.1
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 7.9e-109 398.7 503 47.5
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 7.9e-109 398.7 500 47.6
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 1.0e-108 398.3 464 50.0
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 3.0e-108 396.7 525 47.2
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 3.9e-108 396.4 460 49.3
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.1e-107 394.8 460 50.4
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 1.5e-107 394.4 503 47.3
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.5e-107 394.4 404 54.2
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 2.0e-107 394.0 554 42.6
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 3.3e-107 393.3 460 48.3
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 4.4e-107 392.9 459 49.0
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 5.7e-107 392.5 459 49.9
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 5.7e-107 392.5 470 48.3
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 7.4e-107 392.1 463 49.2
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 7.4e-107 392.1 457 49.0
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 9.7e-107 391.7 459 48.4
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 9.7e-107 391.7 507 47.9
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.3e-106 391.3 457 49.5
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 3.7e-106 389.8 453 49.0
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 3.7e-106 389.8 436 49.8
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 3.7e-106 389.8 470 48.5
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 3.7e-106 389.8 493 47.1
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 6.3e-106 389.0 546 44.5
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 6.3e-106 389.0 456 48.0
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 6.3e-106 389.0 436 50.5
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 6.3e-106 389.0 487 47.2
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 8.2e-106 388.7 505 46.9
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 8.2e-106 388.7 429 51.3
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.1e-105 388.3 459 48.4
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.4e-105 387.9 441 48.8
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 1.4e-105 387.9 456 49.1
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 2.4e-105 387.1 460 49.8
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 2.4e-105 387.1 439 49.9
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 4.1e-105 386.3 497 45.9
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 4.1e-105 386.3 457 48.8
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 5.3e-105 386.0 453 48.3
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 9.1e-105 385.2 450 49.8
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.2e-104 384.8 450 49.8
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 1.5e-104 384.4 461 49.5
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.0e-104 384.0 450 49.8
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 2.6e-104 383.6 457 47.9
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 3.5e-104 383.3 450 49.6
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 4.5e-104 382.9 457 48.6
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 7.7e-104 382.1 453 48.8
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 1.3e-103 381.3 458 49.6
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.3e-103 381.3 462 48.5
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 2.2e-103 380.6 444 48.4
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 2.9e-103 380.2 461 48.4
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.9e-103 380.2 460 47.4
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 3.8e-103 379.8 536 44.8
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 3.8e-103 379.8 454 48.7
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 5.0e-103 379.4 440 50.0
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 1.1e-102 378.3 454 48.9
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.1e-102 378.3 448 47.1
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 1.9e-102 377.5 460 48.3
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 4.2e-102 376.3 405 53.1
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 7.2e-102 375.6 528 43.8
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 1.2e-101 374.8 389 54.0
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.6e-101 374.4 450 48.2
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.6e-101 374.4 466 48.1
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 2.1e-101 374.0 458 46.7
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 2.7e-101 373.6 451 49.0
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 2.7e-101 373.6 451 49.0
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 3.6e-101 373.2 453 48.8
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 6.1e-101 372.5 462 47.4
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 8.0e-101 372.1 457 47.5
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 8.0e-101 372.1 460 47.6
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 1.0e-100 371.7 514 44.0
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.3e-100 370.5 455 48.1
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 8.8e-100 368.6 497 45.1
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.5e-99 367.9 424 49.1
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 5.7e-99 365.9 526 43.9
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.7e-98 364.4 504 43.5
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 2.4e-97 360.5 403 48.9
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 3.1e-97 360.1 397 50.6
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 4.2e-94 349.7 552 41.3
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.7e-93 347.1 455 44.8
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 5.2e-92 342.8 455 44.2
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 3.1e-89 333.6 453 45.5
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 5.4e-89 332.8 451 45.5
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 7.0e-89 332.4 449 46.1
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 9.1e-89 332.0 438 44.3
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 2.0e-88 330.9 327 52.3
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 5.9e-88 329.3 489 42.3
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.2e-87 327.4 436 44.7
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 5.5e-86 322.8 372 51.6
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 5.9e-80 302.8 457 42.5
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.5e-78 298.1 350 46.9
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 4.2e-78 296.6 437 40.7
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 3.2e-73 280.4 312 49.0
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 4.3e-70 270.0 340 49.1
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.7e-66 256.9 467 37.3
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 2.0e-64 251.1 413 39.2
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 1.1e-62 245.4 326 45.1
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 7.3e-62 242.7 500 35.8
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 9.5e-62 242.3 294 48.3
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.8e-60 238.0 264 51.1
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 7.1e-57 226.1 356 37.6
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 4.3e-54 216.9 528 32.2
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 4.3e-46 190.3 309 41.1
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 5.2e-44 183.3 230 47.0
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 4.8e-29 133.7 340 32.6
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 1.5e-22 112.1 98 56.1
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.5e-22 112.1 199 36.2
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 3.8e-18 97.4 144 43.8
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 9.6e-14 82.8 131 40.5
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.3e-13 82.4 165 33.3
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.7e-13 80.9 101 41.6
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.4e-12 79.0 181 35.4
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.4e-12 79.0 88 47.7
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 1.0e-10 72.8 66 47.0
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 3.9e-07 60.8 64 46.9


User provided reference genes

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