Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 4.2e-153 544.7 273 100.0
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 2.7e-83 312.8 273 60.8
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 2.7e-83 312.8 273 61.9
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.0e-79 300.8 276 58.3
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 7.3e-73 278.1 277 56.0
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 2.3e-71 273.1 271 53.9
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 2.2e-69 266.5 263 57.4
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.1e-68 264.2 269 53.9
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 1.6e-67 260.4 263 54.4
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 1.6e-67 260.4 263 54.4
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 4.6e-67 258.8 269 52.0
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 7.8e-67 258.1 269 52.4
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 7.8e-67 258.1 270 52.6
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 7.8e-67 258.1 269 53.2
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 1.3e-66 257.3 269 52.8
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.3e-66 257.3 269 53.2
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.7e-66 256.9 270 52.6
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 1.7e-66 256.9 269 52.0
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 3.0e-66 256.1 270 52.6
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 3.0e-66 256.1 269 52.4
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 3.9e-66 255.8 269 52.4
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 3.9e-66 255.8 271 52.4
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 5.0e-66 255.4 267 52.8
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 8.6e-66 254.6 270 51.9
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 1.1e-65 254.2 269 52.4
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 2.5e-65 253.1 261 52.5
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 3.3e-65 252.7 263 52.5
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.3e-65 252.3 269 52.8
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 4.3e-65 252.3 270 51.5
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 5.6e-65 251.9 269 51.7
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 5.6e-65 251.9 264 55.3
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 5.6e-65 251.9 269 51.7
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 5.6e-65 251.9 269 52.4
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 9.5e-65 251.1 263 53.6
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 9.5e-65 251.1 263 52.9
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 1.6e-64 250.4 270 51.5
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 2.1e-64 250.0 263 53.2
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 2.1e-64 250.0 269 52.8
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 2.8e-64 249.6 263 52.5
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.6e-64 249.2 269 51.7
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 3.6e-64 249.2 263 53.2
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 6.2e-64 248.4 264 53.0
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 8.0e-64 248.1 261 51.7
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.1e-63 247.7 271 51.7
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.1e-63 247.7 263 52.5
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 1.4e-63 247.3 263 52.9
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 2.3e-63 246.5 289 50.9
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 3.1e-63 246.1 264 53.0
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 3.1e-63 246.1 265 50.2
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 3.1e-63 246.1 279 48.7
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 4.0e-63 245.7 263 51.7
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 5.2e-63 245.4 242 52.9
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 5.2e-63 245.4 265 53.2
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 5.2e-63 245.4 263 52.5
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 5.2e-63 245.4 263 53.2
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 5.2e-63 245.4 263 53.6
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 5.2e-63 245.4 263 53.6
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 5.2e-63 245.4 263 52.1
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 6.8e-63 245.0 264 51.9
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.2e-62 244.2 263 51.0
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 1.2e-62 244.2 263 52.5
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 1.2e-62 244.2 270 51.1
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 2.0e-62 243.4 264 52.7
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 2.6e-62 243.0 271 50.9
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 2.6e-62 243.0 271 50.6
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 3.4e-62 242.7 264 54.2
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 3.4e-62 242.7 263 51.0
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.4e-62 242.7 263 51.7
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 3.4e-62 242.7 263 52.1
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 3.4e-62 242.7 265 51.7
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 4.4e-62 242.3 263 52.1
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 4.4e-62 242.3 283 49.8
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 5.8e-62 241.9 263 52.1
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.8e-62 241.9 263 51.7
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.8e-62 241.9 263 51.7
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.8e-62 241.9 263 51.7
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 5.8e-62 241.9 263 52.1
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 7.5e-62 241.5 263 50.6
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 7.5e-62 241.5 263 50.6
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 9.8e-62 241.1 270 53.0
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.8e-62 241.1 263 52.5
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.2e-61 240.0 263 51.3
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.2e-61 240.0 263 51.3
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 2.2e-61 240.0 271 51.3
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 2.9e-61 239.6 269 50.2
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 2.9e-61 239.6 266 50.8
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 2.9e-61 239.6 266 50.8
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.9e-61 238.8 263 52.1
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.9e-61 238.8 263 52.1
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 4.9e-61 238.8 279 51.6
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 6.4e-61 238.4 269 50.6
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 1.1e-60 237.7 266 50.4
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 1.4e-60 237.3 272 50.0
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 2.4e-60 236.5 410 39.3
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 3.2e-60 236.1 269 49.8
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 5.4e-60 235.3 268 50.0
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 7.1e-60 235.0 263 50.2
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 1.2e-59 234.2 267 48.7
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.1e-59 233.4 279 49.8
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 6.0e-59 231.9 272 50.0
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 1.0e-58 231.1 270 49.6
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 1.3e-58 230.7 269 49.4
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 3.9e-58 229.2 269 49.1
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 3.9e-58 229.2 292 46.6
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.9e-58 229.2 269 50.2
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.1e-57 227.6 280 46.1
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 1.5e-57 227.3 265 48.3
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 1.9e-57 226.9 327 42.5
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 2.5e-57 226.5 270 48.5
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 4.3e-57 225.7 271 49.4
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 7.3e-57 224.9 232 53.9
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 9.5e-57 224.6 267 48.7
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 9.5e-57 224.6 263 47.9
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 1.2e-56 224.2 270 48.9
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 2.1e-56 223.4 271 48.7
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 4.7e-56 222.2 266 50.0
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.4e-55 220.7 251 49.8
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.5e-54 217.2 334 42.2
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.5e-54 217.2 305 44.9
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.5e-54 217.2 305 44.9
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 4.4e-54 215.7 312 42.3
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 6.4e-53 211.8 324 43.8
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 6.4e-53 211.8 235 49.8
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 8.3e-53 211.5 246 48.4
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.4e-52 210.7 233 51.5
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 2.4e-52 209.9 258 49.2
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 2.4e-52 209.9 291 43.0
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 3.5e-51 206.1 353 39.9
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 4.6e-51 205.7 274 45.6
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 3.0e-50 203.0 228 50.4
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 1.1e-49 201.1 264 45.5
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 2.5e-49 199.9 263 46.8
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 2.5e-49 199.9 229 50.2
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 1.6e-48 197.2 222 50.0
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 1.4e-47 194.1 281 43.8
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 4.4e-46 189.1 224 49.6
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 9.9e-46 188.0 265 44.5
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 1.7e-45 187.2 235 45.5
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.2e-45 186.8 222 47.3
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.2e-44 183.0 182 57.1
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 4.2e-44 182.6 142 63.4
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 1.6e-43 180.6 197 51.8
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.9e-42 176.0 178 53.9
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.1e-41 174.5 265 42.3
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 5.6e-41 172.2 229 45.4
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 2.1e-40 170.2 164 56.1
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 3.6e-40 169.5 135 62.2
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 4.8e-40 169.1 170 57.6
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 1.8e-39 167.2 174 54.6
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 1.8e-39 167.2 234 42.3
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 5.3e-39 165.6 194 49.0
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 2.0e-38 163.7 137 62.0
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 6.4e-37 158.7 204 47.5
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 2.4e-36 156.8 217 45.2
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.3e-33 146.4 127 59.1
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.6e-32 144.1 281 35.9
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 8.1e-32 141.7 132 56.8
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.2e-30 137.9 257 37.7
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 2.3e-26 123.6 215 38.6
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 4.3e-25 119.4 171 43.3
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 6.2e-24 115.5 157 46.5
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 5.3e-23 112.5 221 34.4
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.6e-22 110.2 153 43.1
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 3.4e-22 109.8 197 39.1
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 7.6e-22 108.6 262 32.1
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 3.8e-21 106.3 92 60.9
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.9e-20 104.0 92 57.6
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.8e-15 87.4 69 63.8
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 9.0e-15 85.1 185 36.2
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.0e-13 79.3 67 59.7
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 3.2e-12 76.6 56 60.7
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.3e-12 75.1 160 31.9
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.3e-10 71.2 168 31.0
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 1.9e-09 67.4 105 38.1
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 2.2e-08 63.9 74 48.6
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.1e-07 61.6 139 38.8


User provided reference genes

Program Settings