Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.4e-231 805.8 393 100.0
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.3e-135 485.3 335 70.1
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.9e-123 446.0 312 67.0
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 2.4e-117 426.4 344 59.6
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.2e-92 344.4 341 51.6
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 8.0e-89 331.6 310 56.1
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.4e-85 320.9 250 58.4
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 3.8e-83 312.8 312 53.5
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 1.8e-69 267.3 320 44.7
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 5.4e-69 265.8 326 42.6
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.2e-68 264.6 323 43.0
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 3.5e-68 263.1 320 42.8
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.5e-68 262.7 319 42.6
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 5.9e-68 262.3 319 42.3
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 5.9e-68 262.3 379 40.6
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 5.9e-68 262.3 324 43.2
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 5.9e-68 262.3 341 40.5
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 7.8e-68 261.9 319 42.9
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 7.8e-68 261.9 320 42.8
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.0e-67 261.5 323 42.4
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 1.0e-67 261.5 320 43.1
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.0e-67 261.5 319 43.6
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.3e-67 261.2 329 41.6
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.7e-67 260.8 320 42.8
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.9e-67 260.0 391 38.4
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 2.9e-67 260.0 319 42.9
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 2.9e-67 260.0 323 42.1
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.9e-67 260.0 323 42.1
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.9e-67 260.0 323 42.1
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 2.9e-67 260.0 318 42.5
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 2.9e-67 260.0 318 42.5
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 2.9e-67 260.0 317 42.9
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 3.8e-67 259.6 319 42.6
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 3.8e-67 259.6 318 42.8
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 3.8e-67 259.6 318 42.8
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 5.0e-67 259.2 321 42.7
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 5.0e-67 259.2 341 40.5
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 6.6e-67 258.8 319 42.6
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 6.6e-67 258.8 332 41.6
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 6.6e-67 258.8 319 42.9
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 6.6e-67 258.8 341 41.1
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 6.6e-67 258.8 401 37.9
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.6e-67 258.5 323 42.1
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.6e-67 258.5 312 42.9
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.1e-66 258.1 319 42.3
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.1e-66 258.1 374 39.8
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.5e-66 257.7 335 40.6
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.5e-66 257.7 319 42.6
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.5e-66 257.7 323 42.4
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.9e-66 257.3 319 41.4
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 2.5e-66 256.9 319 42.3
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 2.5e-66 256.9 319 42.3
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 3.3e-66 256.5 341 40.5
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 3.3e-66 256.5 319 42.0
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 3.3e-66 256.5 319 42.0
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 3.3e-66 256.5 319 42.0
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 3.3e-66 256.5 319 42.0
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 3.3e-66 256.5 320 43.1
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 3.3e-66 256.5 329 41.9
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 4.3e-66 256.1 319 42.0
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 4.3e-66 256.1 320 43.1
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 4.3e-66 256.1 341 40.5
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 5.6e-66 255.8 324 41.7
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 5.6e-66 255.8 341 40.2
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 5.6e-66 255.8 319 42.6
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 5.6e-66 255.8 341 40.5
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 5.6e-66 255.8 343 41.1
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 7.3e-66 255.4 342 41.2
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 7.3e-66 255.4 320 43.8
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 7.3e-66 255.4 319 41.7
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 7.3e-66 255.4 335 41.2
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 7.3e-66 255.4 343 41.7
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 7.3e-66 255.4 344 41.3
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 7.3e-66 255.4 319 42.6
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 9.5e-66 255.0 344 40.4
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 1.2e-65 254.6 341 40.5
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-65 254.6 320 41.9
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-65 254.6 320 41.9
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.2e-65 254.6 320 42.2
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.6e-65 254.2 342 40.9
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.6e-65 254.2 320 41.9
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.6e-65 254.2 319 42.0
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 2.1e-65 253.8 345 39.7
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.1e-65 253.8 319 42.0
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 2.1e-65 253.8 320 42.2
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 2.8e-65 253.4 320 41.9
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 2.8e-65 253.4 320 42.2
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 3.6e-65 253.1 337 40.7
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 3.6e-65 253.1 329 41.9
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 4.7e-65 252.7 374 39.3
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.7e-65 252.7 348 40.8
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 6.1e-65 252.3 318 41.5
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 8.0e-65 251.9 319 42.3
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 8.0e-65 251.9 319 41.7
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 1.0e-64 251.5 319 41.7
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 1.4e-64 251.1 321 41.4
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 2.3e-64 250.4 333 40.5
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 2.3e-64 250.4 323 41.5
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 2.3e-64 250.4 324 40.7
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.0e-64 250.0 393 39.2
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 3.0e-64 250.0 320 41.9
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 4.0e-64 249.6 322 41.6
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 5.2e-64 249.2 320 42.5
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 5.2e-64 249.2 400 37.0
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 8.9e-64 248.4 320 42.5
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.2e-63 248.1 342 40.6
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 1.5e-63 247.7 321 41.7
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.5e-63 247.7 320 42.8
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.0e-63 247.3 321 41.7
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.6e-63 246.9 315 41.3
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.6e-63 246.9 314 42.7
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 2.6e-63 246.9 315 41.9
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 3.4e-63 246.5 308 42.5
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.4e-63 246.5 319 41.1
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 5.7e-63 245.7 298 44.3
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 7.5e-63 245.4 299 43.5
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 9.8e-63 245.0 319 41.4
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.3e-62 244.6 297 43.8
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.3e-62 244.6 321 41.4
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 3.7e-62 243.0 409 36.9
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.7e-62 243.0 319 40.4
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 8.3e-62 241.9 348 39.1
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 4.1e-61 239.6 298 42.6
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 5.4e-61 239.2 298 42.6
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 4.6e-60 236.1 314 41.4
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 6.0e-60 235.7 307 41.4
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 8.6e-59 231.9 379 35.9
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 7.3e-58 228.8 324 39.8
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 9.5e-58 228.4 318 39.0
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 3.6e-57 226.5 326 39.6
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.1e-53 214.9 319 38.6
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 7.0e-53 212.2 228 43.9
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 6.2e-49 199.1 258 40.7
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 4.0e-48 196.4 264 41.7
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 2.7e-44 183.7 500 27.0
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.5e-42 177.9 219 40.6
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 1.5e-42 177.9 473 27.9
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.8e-40 171.0 222 41.9
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 3.1e-40 170.2 234 40.2
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.0e-39 167.5 314 34.1
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.7e-36 157.1 235 41.7
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.9e-32 142.5 193 39.9
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 2.0e-31 141.0 183 42.6
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-29 134.4 174 40.8
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 8.7e-27 125.6 134 44.0
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.3e-19 100.9 155 38.1
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 6.0e-12 76.3 176 36.4
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 7.4e-10 69.3 55 56.4
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.6e-09 68.2 109 36.7
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 5.3e-08 63.2 157 33.1


User provided reference genes

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