Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 0.0e+00 1587.4 805 100.0
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 2.3e-308 1062.0 656 81.1
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 6.9e-297 1023.8 699 74.5
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 2.9e-295 1018.5 681 75.2
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 4.9e-295 1017.7 678 75.7
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 6.5e-295 1017.3 627 78.8
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 6.5e-295 1017.3 661 76.7
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 8.4e-295 1016.9 691 73.8
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 1.1e-294 1016.5 686 73.9
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 1.4e-294 1016.1 687 75.1
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 4.2e-294 1014.6 678 75.2
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 5.5e-294 1014.2 632 79.0
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 7.1e-294 1013.8 684 75.3
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 9.3e-294 1013.4 663 76.5
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 9.3e-294 1013.4 663 76.5
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 9.3e-294 1013.4 703 73.4
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 2.1e-293 1012.3 687 74.5
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 2.7e-293 1011.9 712 72.9
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 3.5e-293 1011.5 687 75.0
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 4.6e-293 1011.1 636 78.5
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 6.0e-293 1010.7 627 78.6
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 7.9e-293 1010.4 661 76.2
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 7.9e-293 1010.4 627 79.4
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 1.3e-292 1009.6 649 76.4
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 1.3e-292 1009.6 647 77.0
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 1.3e-292 1009.6 724 71.3
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 1.8e-292 1009.2 699 73.1
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 3.0e-292 1008.4 627 78.0
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 3.0e-292 1008.4 658 76.0
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 3.9e-292 1008.1 683 74.7
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 5.1e-292 1007.7 698 73.5
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 6.7e-292 1007.3 628 78.7
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 6.7e-292 1007.3 644 76.9
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 1.1e-291 1006.5 684 74.1
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 1.5e-291 1006.1 634 77.8
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 1.5e-291 1006.1 695 71.8
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 1.5e-291 1006.1 627 78.1
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 1.9e-291 1005.7 640 77.5
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 3.3e-291 1005.0 701 73.3
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 7.4e-291 1003.8 707 73.8
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 9.6e-291 1003.4 706 73.1
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 1.3e-290 1003.0 627 78.5
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 1.3e-290 1003.0 710 72.0
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 1.3e-290 1003.0 694 73.5
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 2.1e-290 1002.3 676 74.7
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 2.1e-290 1002.3 627 78.5
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 2.1e-290 1002.3 710 71.8
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 2.8e-290 1001.9 655 76.5
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 2.8e-290 1001.9 627 78.3
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 6.3e-290 1000.7 702 71.8
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 6.3e-290 1000.7 703 73.3
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 3.1e-289 998.4 624 78.5
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 4.1e-289 998.0 688 72.5
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 6.9e-289 997.3 694 72.3
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 6.9e-289 997.3 667 74.2
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 9.0e-289 996.9 681 73.4
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 5.9e-288 994.2 674 74.8
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 5.9e-288 994.2 636 76.3
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 1.0e-287 993.4 655 75.7
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 1.3e-287 993.0 699 71.0
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 1.3e-287 993.0 650 74.8
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 1.7e-287 992.6 688 72.4
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 3.8e-287 991.5 679 72.8
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 7.2e-286 987.3 742 69.0
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 7.2e-286 987.3 742 69.0
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 4.6e-285 984.6 677 73.4
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 2.3e-284 982.2 672 73.2
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 5.1e-284 981.1 677 71.8
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 6.7e-284 980.7 644 75.5
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 1.9e-283 979.2 686 71.6
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 7.4e-283 977.2 715 70.8
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 6.3e-282 974.2 715 70.6
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 8.2e-282 973.8 688 71.8
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 8.2e-282 973.8 664 73.6
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 3.1e-281 971.8 750 66.8
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 2.9e-279 965.3 610 77.9
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 1.2e-277 959.9 708 69.1
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 1.1e-273 946.8 694 70.9
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 2.6e-272 942.2 756 65.6
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 1.4e-270 936.4 686 70.3
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 3.9e-268 928.3 681 69.9
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 8.8e-268 927.2 627 73.7
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 1.4e-265 919.8 639 72.3
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 4.1e-265 918.3 654 69.6
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 9.1e-265 917.1 857 58.0
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 4.0e-260 901.7 710 67.0
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 1.2e-256 890.2 751 62.6
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 2.1e-253 879.4 642 70.4
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 9.1e-249 864.0 649 66.6
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 2.1e-245 852.8 545 76.7
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 1.4e-241 840.1 541 78.6
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.2e-240 837.0 542 77.3
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.6e-240 836.6 503 82.1
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 3.0e-236 822.4 643 66.4
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 4.0e-236 822.0 548 76.3
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 1.2e-235 820.5 524 77.1
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 1.2e-229 800.4 514 76.7
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 2.3e-228 796.2 610 65.9
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 8.3e-226 787.7 508 76.0
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 2.7e-224 782.7 505 75.0
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 4.1e-217 758.8 454 81.9
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 5.1e-215 751.9 577 66.4
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.1e-214 750.7 463 80.8
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 1.8e-204 716.8 385 89.9
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.5e-182 644.0 484 67.1
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 2.8e-173 613.2 411 75.4
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 4.5e-163 579.3 384 72.4
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 5.9e-155 552.4 353 75.1
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 3.7e-149 533.1 402 66.2
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 2.5e-137 493.8 299 80.3
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.3e-130 471.5 595 45.0
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.2e-118 431.8 646 39.2
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.2e-115 421.8 452 52.4
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 3.9e-106 390.2 651 38.4
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 1.4e-100 371.7 521 42.0
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 4.4e-94 350.1 355 53.5
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 1.6e-91 341.7 360 53.1
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 3.6e-80 303.9 315 52.1
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 3.1e-71 274.2 161 82.6
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.1e-67 261.5 203 61.6
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 1.3e-64 252.3 161 76.4
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 3.2e-60 237.7 166 66.9
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 5.3e-55 220.3 177 60.5
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 2.8e-48 198.0 187 61.0
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.4e-47 194.9 230 50.0
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.6e-41 174.9 109 81.7
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 1.4e-39 169.1 143 61.5
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 3.1e-39 167.9 184 48.4
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 2.2e-37 161.8 105 76.2
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 2.9e-37 161.4 242 44.2
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 9.7e-33 146.4 83 86.7
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 7.0e-31 140.2 72 88.9
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 6.5e-29 133.7 71 78.9
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 4.4e-25 120.9 113 55.8
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 1.8e-23 115.5 96 61.5
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 2.9e-21 108.2 137 44.5
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 1.2e-19 102.8 70 70.0
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 2.1e-19 102.1 69 69.6
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 3.6e-19 101.3 70 68.6
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 1.3e-13 82.8 47 72.3
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.9e-12 79.0 41 87.8
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 3.3e-12 78.2 48 70.8
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 8.0e-11 73.6 73 54.8
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 5.4e-07 60.8 57 45.6
Cpa.g.c37459 Carica papaya HOM05D005018 ORTHO05D043556 4.5e-06 57.8 27 96.3


User provided reference genes

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