Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0064s0016 Marchantia polymorpha HOM05D001273 ORTHO05D254015 6.9e-219 764.2 562 100.0
QL02p042453 Quercus lobata HOM05D001273 ORTHO05D000023 2.0e-08 65.1 54 50.0
SEGI_14423 Sequoiadendron giganteum HOM05D001273 ORTHO05D000023 3.4e-08 64.3 54 48.1
ATR0705G141 Amborella trichopoda HOM05D001273 ORTHO05D000023 5.8e-08 63.5 54 50.0
DCAR_024698 Daucus carota HOM05D001273 ORTHO05D000023 5.8e-08 63.5 54 48.1
Lsat_1_v5_gn_7_41120 Lactuca sativa HOM05D001273 ORTHO05D000023 5.8e-08 63.5 54 51.9
Ca_17350_v3 Cicer arietinum L. HOM05D001273 ORTHO05D000023 7.6e-08 63.2 54 48.1
ECA240G3615 Erigeron canadensis HOM05D001273 ORTHO05D000023 7.6e-08 63.2 67 47.8
HanXRQChr09g0238911 Helianthus annuus HOM05D001273 ORTHO05D000023 7.6e-08 63.2 54 48.1
TWI63G0391 Tripterygium wilfordii HOM05D001273 ORTHO05D000023 7.6e-08 63.2 54 48.1
Cc06_g10200 Coffea canephora HOM05D001273 ORTHO05D000023 9.9e-08 62.8 54 46.3
COL.COLO4_34785 Corchorus olitorius HOM05D001273 ORTHO05D000023 1.3e-07 62.4 54 46.3
Duzib168G1568 Durio zibethinus HOM05D001273 ORTHO05D000023 1.3e-07 62.4 54 48.1
Manes.16G111400 Manihot esculenta HOM05D001273 ORTHO05D000023 1.3e-07 62.4 54 48.1
Atru.chr7.1426 Acer truncatum HOM05D001273 ORTHO05D000023 1.7e-07 62.0 54 48.1
Ah.09g228900 Amaranthus hybridus HOM05D001273 ORTHO05D000023 1.7e-07 62.0 54 46.3
Cpa.g.sc40.34 Carica papaya HOM05D001273 ORTHO05D000023 1.7e-07 62.0 54 48.1
AUR62028324 Chenopodium quinoa HOM05D001273 ORTHO05D000023 1.7e-07 62.0 54 46.3
Gohir.A06G065800 Gossypium hirsutum HOM05D001273 ORTHO05D000023 1.7e-07 62.0 54 46.3
Gohir.D06G064400 Gossypium hirsutum HOM05D001273 ORTHO05D000023 1.7e-07 62.0 54 46.3
Gorai.010G075200 Gossypium raimondii HOM05D001273 ORTHO05D000023 1.7e-07 62.0 54 46.3
Nitab4.5_0000066g0210 Nicotiana tabacum HOM05D001273 ORTHO05D000023 1.7e-07 62.0 54 46.3
Potri.006G163100 Populus trichocarpa HOM05D001273 ORTHO05D000023 1.7e-07 62.0 67 46.3
EL10Ac8g18963 Beta vulgaris HOM05D001273 ORTHO05D000023 2.2e-07 61.6 54 46.3
CSS0003269 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 2.2e-07 61.6 54 50.0
CSS0020653 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 2.2e-07 61.6 54 50.0
CANSAT56G4419 Cannabis sativa HOM05D001273 ORTHO05D000023 2.2e-07 61.6 54 51.9
Cfa003211 Carpinus fangiana HOM05D001273 ORTHO05D000023 2.2e-07 61.6 54 48.1
Haze_25797 Corylus avellana HOM05D001273 ORTHO05D000023 2.2e-07 61.6 54 48.1
Oeu053754.1 Olea europaea HOM05D001273 ORTHO05D000023 2.2e-07 61.6 54 50.0
Sc08g0007820 Simmondsia chinensis HOM05D001273 ORTHO05D000023 2.2e-07 61.6 54 46.3
AUR62025336 Chenopodium quinoa HOM05D001273 ORTHO05D000023 2.9e-07 61.2 54 44.4
ClCG11G002280 Citrullus lanatus HOM05D001273 ORTHO05D000023 2.9e-07 61.2 54 48.1
MELO3C004577.2 Cucumis melo HOM05D001273 ORTHO05D000023 2.9e-07 61.2 54 48.1
Migut.K00519 Erythranthe guttata HOM05D001273 ORTHO05D000023 2.9e-07 61.2 54 51.9
Pp3c23_16010 Physcomitrium patens HOM05D001273 ORTHO05D000023 2.9e-07 61.2 54 46.3
SalBow8G2593 Salvia bowleyana HOM05D001273 ORTHO05D000023 2.9e-07 61.2 54 50.0
Thecc.09G103900 Theobroma cacao HOM05D001273 ORTHO05D000023 2.9e-07 61.2 54 46.3
HPP92_024166 Vanilla planifolia HOM05D001273 ORTHO05D000023 2.9e-07 61.2 54 48.1
Ciclev10010654m.g Citrus clementina HOM05D001273 ORTHO05D000023 3.8e-07 60.8 54 46.3
TAR624G0236 Trochodendron aralioides HOM05D001273 ORTHO05D000023 3.8e-07 60.8 54 48.1
GSVIVG01015331001 Vitis vinifera HOM05D001273 ORTHO05D000023 3.8e-07 60.8 54 48.1
Aa31LG7G7430 Aethionema arabicum HOM05D001273 ORTHO05D000023 4.9e-07 60.5 54 46.3
CARHR110500 Cardamine hirsuta HOM05D001273 ORTHO05D000023 4.9e-07 60.5 54 48.1
Nn8g40932 Nelumbo nucifera HOM05D001273 ORTHO05D000023 4.9e-07 60.5 54 48.1
Nitab4.5_0000012g0190 Nicotiana tabacum HOM05D001273 ORTHO05D000023 4.9e-07 60.5 72 41.7
Pp3c8_14060 Physcomitrium patens HOM05D001273 ORTHO05D000023 4.9e-07 60.5 54 44.4
Sabra06G0125500 Salix brachista HOM05D001273 ORTHO05D000023 4.9e-07 60.5 67 44.8
Sed0022257 Sechium edule HOM05D001273 ORTHO05D000023 4.9e-07 60.5 54 48.1
Eucgr.F01559 Eucalyptus grandis HOM05D001273 ORTHO05D000023 6.4e-07 60.1 67 44.8
PGR142G4117 Punica granatum HOM05D001273 ORTHO05D000023 6.4e-07 60.1 54 48.1
Aqoxy7G03909 Aquilegia oxysepala HOM05D001273 ORTHO05D000023 8.4e-07 59.7 54 48.1
EL10Ac6g13705 Beta vulgaris HOM05D001273 ORTHO05D000023 8.4e-07 59.7 54 48.1
Hma1.2p1_0945F.1_g240220 Hydrangea macrophylla HOM05D001273 ORTHO05D000023 8.4e-07 59.7 54 50.0
Lalb_Chr09g0331391 Lupinus albus HOM05D001273 ORTHO05D000023 8.4e-07 59.7 67 44.8
PSO210G5770 Papaver somniferum HOM05D001273 ORTHO05D000023 8.4e-07 59.7 54 48.1
PSO210G6932 Papaver somniferum HOM05D001273 ORTHO05D000023 8.4e-07 59.7 54 48.1
Prupe.7G223600 Prunus persica HOM05D001273 ORTHO05D000023 8.4e-07 59.7 54 44.4
RcHm_v2.0_Chr2g0091431 Rosa chinensis HOM05D001273 ORTHO05D000023 8.4e-07 59.7 54 44.4
Sc04g0009280 Simmondsia chinensis HOM05D001273 ORTHO05D000023 8.4e-07 59.7 54 48.1
VMungo0331G0122 Vigna mungo HOM05D001273 ORTHO05D000023 8.4e-07 59.7 54 46.3
Aa31LG8G16960 Aethionema arabicum HOM05D001273 ORTHO05D000023 1.1e-06 59.3 67 44.8
AL3G48070 Arabidopsis lyrata HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 46.3
BcaB03g16793 Brassica carinata HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 46.3
BcaC06g36677 Brassica carinata HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 46.3
A07p00620 Brassica napus HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 46.3
C07p01140 Brassica napus HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 46.3
BolC7t40559H Brassica oleracea HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 46.3
BraA07t27858Z Brassica rapa HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 46.3
Carub.0003s3429 Capsella rubella HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 46.3
Thhalv10001924m.g Eutrema salsugineum HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 46.3
FAN26G0151 Fragaria x ananassa HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 44.4
MD02G1059500 Malus domestica HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 44.4
MD15G1193500 Malus domestica HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 44.4
Potri.010G042500 Populus trichocarpa HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 50.0
Sp3g33340 Schrenkiella parvula HOM05D001273 ORTHO05D000023 1.1e-06 59.3 54 46.3
AT2G20020 Arabidopsis thaliana HOM05D001273 ORTHO05D000023 1.4e-06 58.9 54 44.4
FvH4_1g05780 Fragaria vesca HOM05D001273 ORTHO05D000023 1.4e-06 58.9 54 44.4
FAN23G2253 Fragaria x ananassa HOM05D001273 ORTHO05D000023 1.4e-06 58.9 54 44.4
FAN28G1921 Fragaria x ananassa HOM05D001273 ORTHO05D000023 1.4e-06 58.9 54 44.4
Psat7g015680 Pisum sativum HOM05D001273 ORTHO05D000023 1.4e-06 58.9 54 46.3
SGA_v2.0_scaffold19G08759 Striga asiatica HOM05D001273 ORTHO05D000023 1.4e-06 58.9 54 46.3
CANSAT01G0845 Cannabis sativa HOM05D001273 ORTHO05D000023 1.9e-06 58.5 67 46.3
Dinv41652 Davidia involucrata HOM05D001273 ORTHO05D000023 1.9e-06 58.5 54 46.3
Phvul.002G251600 Phaseolus vulgaris HOM05D001273 ORTHO05D000023 1.9e-06 58.5 54 44.4
Phvul.002G310400 Phaseolus vulgaris HOM05D001273 ORTHO05D000023 1.9e-06 58.5 54 42.6
AagrBONN_evm.TU.Sc2ySwM_117.1043 Anthoceros agrestis HOM05D001273 ORTHO05D000023 2.4e-06 58.2 67 44.8
CiPaw.03G227000 Carya illinoinensis HOM05D001273 ORTHO05D000023 2.4e-06 58.2 54 48.1
CsaV3_2G002040 Cucumis sativus L. HOM05D001273 ORTHO05D000023 2.4e-06 58.2 54 48.1
Solyc05g018240.4 Solanum lycopersicum HOM05D001273 ORTHO05D000023 2.4e-06 58.2 67 41.8
Sopen05g015000 Solanum pennellii HOM05D001273 ORTHO05D000023 2.4e-06 58.2 67 41.8
PGSC0003DMG400027434 Solanum tuberosum HOM05D001273 ORTHO05D000023 2.4e-06 58.2 67 41.8
TWI18G0845 Tripterygium wilfordii HOM05D001273 ORTHO05D000023 2.4e-06 58.2 67 43.3
Zm00001eb306430 Zea mays HOM05D001273 ORTHO05D000023 2.4e-06 58.2 54 46.3
Ca_22507_v3 Cicer arietinum L. HOM05D001273 ORTHO05D000023 3.2e-06 57.8 54 44.4
FvH4_4g32880 Fragaria vesca HOM05D001273 ORTHO05D000023 3.2e-06 57.8 69 40.6
Mapoly0141s0032 Marchantia polymorpha HOM05D001273 ORTHO05D000023 3.2e-06 57.8 67 40.3
Phvul.003G026601 Phaseolus vulgaris HOM05D001273 ORTHO05D000023 3.2e-06 57.8 54 42.6
FAN22G0134 Fragaria x ananassa HOM05D001273 ORTHO05D000023 4.1e-06 57.4 69 40.6
Glyma.01G147400 Glycine max HOM05D001273 ORTHO05D000023 4.1e-06 57.4 54 46.3
Peaxi162Scf00539g00006 Petunia axillaris HOM05D001273 ORTHO05D000023 4.1e-06 57.4 54 44.4
Hund09234 Selenicereus undatus HOM05D001273 ORTHO05D000023 4.1e-06 57.4 54 42.6
Atru.chr1.3797 Acer truncatum HOM05D001273 ORTHO05D000023 5.4e-06 57.0 54 44.4
arahy.Tifrunner.gnm1.ann1.E4JC76 Arachis hypogaea HOM05D001273 ORTHO05D000023 5.4e-06 57.0 54 46.3
arahy.Tifrunner.gnm1.ann1.KPXK74 Arachis hypogaea HOM05D001273 ORTHO05D000023 5.4e-06 57.0 54 46.3
arahy.Tifrunner.gnm1.ann1.T8DWUL Arachis hypogaea HOM05D001273 ORTHO05D000023 5.4e-06 57.0 54 46.3
Cpa.g.sc69.74 Carica papaya HOM05D002061 ORTHO05D000023 5.4e-06 57.0 54 44.4
CDE05G2673 Ceratophyllum demersum HOM05D001273 ORTHO05D000023 5.4e-06 57.0 55 49.1
Medtr8g102850 Medicago truncatula HOM05D001273 ORTHO05D000023 5.4e-06 57.0 54 46.3
Prupe.1G250700 Prunus persica HOM05D001273 ORTHO05D000023 5.4e-06 57.0 67 44.8
Rhsim05G0042000 Rhododendron simsii HOM05D001273 ORTHO05D000023 5.4e-06 57.0 54 42.6
RcHm_v2.0_Chr4g0441911 Rosa chinensis HOM05D001273 ORTHO05D000023 5.4e-06 57.0 69 40.6
Sabra10G0024900 Salix brachista HOM05D001273 ORTHO05D000023 5.4e-06 57.0 54 48.1
SMO353G0332 Selaginella moellendorffii HOM05D001273 ORTHO05D000023 5.4e-06 57.0 72 40.3
unitig_0.g2551 Utricularia gibba HOM05D001273 ORTHO05D000023 5.4e-06 57.0 54 48.1
VMungo0251G1268 Vigna mungo HOM05D001273 ORTHO05D000023 5.4e-06 57.0 54 42.6
GSVIVG01013770001 Vitis vinifera HOM05D001273 ORTHO05D000023 5.4e-06 57.0 67 41.8
Aqoxy5G02781 Aquilegia oxysepala HOM05D001273 ORTHO05D000023 7.1e-06 56.6 67 44.8
AUR62005411 Chenopodium quinoa HOM05D001273 ORTHO05D000023 7.1e-06 56.6 54 44.4
COL.COLO4_24212 Corchorus olitorius HOM05D001273 ORTHO05D000023 7.1e-06 56.6 67 44.8
Gorai.005G181000 Gossypium raimondii HOM05D001273 ORTHO05D000023 7.1e-06 56.6 67 44.8
MD13G1094700 Malus domestica HOM05D001273 ORTHO05D000023 7.1e-06 56.6 54 46.3
Medtr8g069825 Medicago truncatula HOM05D001273 ORTHO05D000023 7.1e-06 56.6 54 42.6
PSO081G0038 Papaver somniferum HOM05D001273 ORTHO05D000023 7.1e-06 56.6 54 37.0
PSO357G0493 Papaver somniferum HOM05D001273 ORTHO05D000023 7.1e-06 56.6 54 37.0
TPR.G24819 Trifolium pratense HOM05D001273 ORTHO05D000023 7.1e-06 56.6 54 42.6
Ah.02g130070 Amaranthus hybridus HOM05D001273 ORTHO05D000023 9.2e-06 56.2 54 48.1
arahy.Tifrunner.gnm1.ann1.1EV8X8 Arachis hypogaea HOM05D001273 ORTHO05D000023 9.2e-06 56.2 54 42.6
arahy.Tifrunner.gnm1.ann1.CYHU50 Arachis hypogaea HOM05D001273 ORTHO05D000023 9.2e-06 56.2 54 42.6
CAN.G546.28 Capsicum annuum HOM05D001273 ORTHO05D000023 9.2e-06 56.2 54 40.7
Gohir.A03G137900 Gossypium hirsutum HOM05D001273 ORTHO05D000023 9.2e-06 56.2 67 43.3
Gohir.D02G160900 Gossypium hirsutum HOM05D001273 ORTHO05D000023 9.2e-06 56.2 67 44.8
Lalb_Chr16g0392291 Lupinus albus HOM05D001273 ORTHO05D000023 9.2e-06 56.2 57 43.9
THA.LOC104804012 Tarenaya hassleriana HOM05D001273 ORTHO05D000023 9.2e-06 56.2 54 42.6
Thecc.02G254400 Theobroma cacao HOM05D001273 ORTHO05D000023 9.2e-06 56.2 67 43.3
VMungo1215G0577 Vigna mungo HOM05D001273 ORTHO05D000023 9.2e-06 56.2 67 44.8


User provided reference genes

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