Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0063s0044 Marchantia polymorpha HOM05D003810 ORTHO05D004416 1.2e-56 223.0 114 100.0
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 7.1e-30 134.0 88 81.8
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 3.6e-10 68.6 86 46.5
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 6.2e-10 67.8 84 44.0
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 1.1e-09 67.0 67 50.7
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 1.1e-09 67.0 64 54.7
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.1e-09 67.0 64 54.7
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.1e-09 67.0 64 54.7
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.4e-09 66.6 87 42.5
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 2.4e-09 65.9 71 54.9
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 2.4e-09 65.9 90 44.4
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 4.0e-09 65.1 58 56.9
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 4.0e-09 65.1 47 66.0
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 4.0e-09 65.1 47 66.0
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 6.9e-09 64.3 67 50.7
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 6.9e-09 64.3 84 41.7
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 9.0e-09 63.9 60 55.0
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.2e-08 63.5 48 60.4
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.2e-08 63.5 48 60.4
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 1.5e-08 63.2 84 42.9
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 1.5e-08 63.2 84 42.9
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 2.0e-08 62.8 84 47.6
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 2.0e-08 62.8 84 42.9
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 2.0e-08 62.8 84 42.9
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 2.6e-08 62.4 78 42.3
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 2.6e-08 62.4 62 50.0
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 3.4e-08 62.0 49 59.2
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 3.4e-08 62.0 83 44.6
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 3.4e-08 62.0 68 47.1
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 3.4e-08 62.0 68 47.1
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 4.5e-08 61.6 59 54.2
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 4.5e-08 61.6 60 51.7
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 4.5e-08 61.6 51 56.9
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 5.8e-08 61.2 49 59.2
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 5.8e-08 61.2 84 42.9
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 5.8e-08 61.2 48 58.3
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 5.8e-08 61.2 48 58.3
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 9.9e-08 60.5 84 40.5
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 9.9e-08 60.5 64 48.4
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 9.9e-08 60.5 64 50.0
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 1.3e-07 60.1 67 46.3
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 1.3e-07 60.1 84 42.9
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 1.3e-07 60.1 80 42.5
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.3e-07 60.1 80 42.5
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 1.7e-07 59.7 65 46.2
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.7e-07 59.7 64 48.4
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.7e-07 59.7 68 45.6
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.7e-07 59.7 75 42.7
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.7e-07 59.7 80 42.5
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 1.7e-07 59.7 48 56.2
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 1.7e-07 59.7 84 40.5
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.2e-07 59.3 85 43.5
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 2.9e-07 58.9 64 51.6
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 2.9e-07 58.9 85 37.6
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 2.9e-07 58.9 68 44.1
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 3.8e-07 58.5 48 54.2
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 3.8e-07 58.5 48 54.2
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 3.8e-07 58.5 84 40.5
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 3.8e-07 58.5 84 40.5
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 4.9e-07 58.2 67 46.3
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 4.9e-07 58.2 67 46.3
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 6.4e-07 57.8 72 47.2
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 6.4e-07 57.8 85 42.4
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 8.4e-07 57.4 84 40.5
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.4e-07 57.4 67 44.8
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.4e-07 57.4 67 44.8
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-06 57.0 82 35.4
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 1.1e-06 57.0 72 47.2
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 1.4e-06 56.6 68 41.2
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.4e-06 56.6 67 44.8
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 1.4e-06 56.6 73 45.2
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 1.4e-06 56.6 47 55.3
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 1.9e-06 56.2 56 53.6
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.9e-06 56.2 56 53.6
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 3.2e-06 55.5 53 52.8
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 3.2e-06 55.5 42 57.1
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 4.2e-06 55.1 68 41.2
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 4.2e-06 55.1 48 54.2
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.5e-06 54.7 88 38.6
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 5.5e-06 54.7 64 43.8
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 5.5e-06 54.7 44 54.5
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 5.5e-06 54.7 96 36.5


User provided reference genes

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