Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0058s0087 Marchantia polymorpha HOM05D001534 ORTHO05D004495 4.7e-35 150.6 74 100.0
Mapoly0008s0011 Marchantia polymorpha HOM05D001534 ORTHO05D004495 7.8e-22 106.7 74 68.9
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 1.5e-20 102.4 71 66.2
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 4.3e-20 100.9 71 64.8
CBR_g41757 Chara braunii HOM05D001534 ORTHO05D004495 5.4e-15 84.0 70 58.6
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 7.1e-15 83.6 70 58.6
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 5.1e-13 77.4 71 52.1
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 4.3e-12 74.3 68 45.6
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 5.6e-12 73.9 71 47.9
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 9.6e-12 73.2 65 50.8
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 9.6e-12 73.2 68 45.6
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 2.1e-11 72.0 65 46.2
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 2.1e-11 72.0 73 47.9
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 2.1e-11 72.0 65 50.8
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 2.1e-11 72.0 71 47.9
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 2.1e-11 72.0 71 47.9
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 2.1e-11 72.0 71 46.5
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 2.8e-11 71.6 71 49.3
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 2.8e-11 71.6 71 47.9
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 2.8e-11 71.6 69 43.5
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 2.8e-11 71.6 71 46.5
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 3.7e-11 71.2 71 46.5
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 3.7e-11 71.2 71 46.5
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.7e-11 71.2 70 47.1
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 3.7e-11 71.2 71 49.3
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 3.7e-11 71.2 71 47.9
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 4.8e-11 70.9 71 46.5
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 6.2e-11 70.5 71 47.9
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 6.2e-11 70.5 65 43.1
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 6.2e-11 70.5 71 46.5
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 6.2e-11 70.5 71 45.1
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 6.2e-11 70.5 71 45.1
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 6.2e-11 70.5 71 45.1
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 8.1e-11 70.1 71 47.9
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 8.1e-11 70.1 71 46.5
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 8.1e-11 70.1 71 46.5
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 8.1e-11 70.1 71 46.5
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 8.1e-11 70.1 71 46.5
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 8.1e-11 70.1 71 46.5
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 8.1e-11 70.1 71 46.5
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 8.1e-11 70.1 71 46.5
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 8.1e-11 70.1 71 46.5
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 8.1e-11 70.1 71 46.5
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 1.1e-10 69.7 65 46.2
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 1.1e-10 69.7 65 46.2
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 1.1e-10 69.7 71 45.1
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 1.1e-10 69.7 71 46.5
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.1e-10 69.7 71 46.5
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 1.1e-10 69.7 68 45.6
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 1.1e-10 69.7 71 47.9
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 1.1e-10 69.7 71 45.1
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 1.4e-10 69.3 71 45.1
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.4e-10 69.3 71 46.5
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 1.4e-10 69.3 71 46.5
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 1.4e-10 69.3 71 45.1
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.4e-10 69.3 71 45.1
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 1.8e-10 68.9 71 46.5
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 1.8e-10 68.9 71 45.1
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 1.8e-10 68.9 71 46.5
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 1.8e-10 68.9 71 46.5
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 1.8e-10 68.9 71 46.5
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 1.8e-10 68.9 71 45.1
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 2.4e-10 68.6 65 44.6
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 2.4e-10 68.6 65 44.6
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 2.4e-10 68.6 65 44.6
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 2.4e-10 68.6 65 44.6
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 2.4e-10 68.6 65 44.6
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 2.4e-10 68.6 65 44.6
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 2.4e-10 68.6 71 45.1
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 2.4e-10 68.6 71 46.5
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 2.4e-10 68.6 71 43.7
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 2.4e-10 68.6 71 45.1
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 2.4e-10 68.6 68 47.1
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 2.4e-10 68.6 71 45.1
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 3.1e-10 68.2 71 46.5
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 3.1e-10 68.2 71 42.3
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 3.1e-10 68.2 71 42.3
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 3.1e-10 68.2 71 45.1
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 3.1e-10 68.2 71 42.3
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 3.1e-10 68.2 71 42.3
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 4.0e-10 67.8 71 43.7
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 4.0e-10 67.8 71 43.7
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 4.0e-10 67.8 71 42.3
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 4.0e-10 67.8 71 43.7
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 4.0e-10 67.8 71 43.7
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 4.0e-10 67.8 65 44.6
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 4.0e-10 67.8 65 44.6
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 42.3
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 5.3e-10 67.4 68 42.6
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 43.7
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 43.7
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 43.7
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 43.7
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 43.7
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 43.7
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 45.1
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 5.3e-10 67.4 73 45.2
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 42.3
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 42.3
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 42.3
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 5.3e-10 67.4 71 42.3
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 5.3e-10 67.4 68 44.1
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 6.9e-10 67.0 65 41.5
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 6.9e-10 67.0 64 43.8
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 6.9e-10 67.0 71 43.7
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 6.9e-10 67.0 65 43.1
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 6.9e-10 67.0 71 45.1
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 6.9e-10 67.0 68 41.2
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 6.9e-10 67.0 71 43.7
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 9.0e-10 66.6 65 43.1
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 9.0e-10 66.6 71 43.7
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 9.0e-10 66.6 71 43.7
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 9.0e-10 66.6 64 43.8
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 9.0e-10 66.6 71 45.1
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 9.0e-10 66.6 68 41.2
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 9.0e-10 66.6 64 45.3
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 1.2e-09 66.2 64 43.8
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 1.2e-09 66.2 65 43.1
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 1.2e-09 66.2 65 46.2
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 1.2e-09 66.2 71 43.7
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.2e-09 66.2 65 44.6
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 1.5e-09 65.9 64 42.2
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 1.5e-09 65.9 71 45.1
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 2.0e-09 65.5 73 45.2
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 2.0e-09 65.5 68 42.6
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 2.6e-09 65.1 64 43.8
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 2.6e-09 65.1 64 43.8
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 2.6e-09 65.1 64 42.2
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 2.6e-09 65.1 71 42.3
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 2.6e-09 65.1 71 42.3
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 2.6e-09 65.1 71 42.3
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 3.4e-09 64.7 64 43.8
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 3.4e-09 64.7 64 43.8
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 3.4e-09 64.7 64 43.8
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 3.4e-09 64.7 64 43.8
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 3.4e-09 64.7 64 43.8
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 3.4e-09 64.7 64 43.8
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 3.4e-09 64.7 65 43.1
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 3.4e-09 64.7 65 43.1
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 4.5e-09 64.3 71 40.8
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 5.8e-09 63.9 71 43.7
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 7.6e-09 63.5 64 42.2
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 7.6e-09 63.5 64 42.2
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 7.6e-09 63.5 64 42.2
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 1.0e-08 63.2 65 44.6
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 1.3e-08 62.8 68 44.1
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 1.7e-08 62.4 65 41.5
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 2.9e-08 61.6 65 36.9
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 3.8e-08 61.2 65 41.5
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 3.8e-08 61.2 65 41.5
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 3.8e-08 61.2 65 40.0
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 4.9e-08 60.8 65 38.5
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 4.9e-08 60.8 65 41.5
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 1.4e-07 59.3 68 41.2
AagrBONN_evm.TU.Sc2ySwM_368.1120 Anthoceros agrestis HOM05D001534 ORTHO05D004495 1.9e-07 58.9 70 42.9
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 4.2e-07 57.8 101 33.7
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 4.2e-07 57.8 65 38.5


User provided reference genes

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