Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0054s0029 Marchantia polymorpha HOM05D015656 ORTHO05D012968 4.2e-312 1074.7 614 100.0
Pp3c14_7190 Physcomitrium patens HOM05D015656 ORTHO05D012968 3.2e-121 439.9 383 58.0
AagrBONN_evm.TU.Sc2ySwM_344.4909 Anthoceros agrestis HOM05D015656 ORTHO05D012968 1.8e-116 424.1 444 51.8
CBR_g12605 Chara braunii HOM05D003266 ORTHO05D012968 9.5e-105 385.2 382 51.3
PRCOL_00006591 Prasinoderma coloniale HOM05D015656 ORTHO05D012968 5.4e-60 236.5 402 36.3
SMO361G0246 Selaginella moellendorffii HOM05D015656 ORTHO05D012968 1.6e-59 235.0 358 39.1
MCO13G543 Micromonas commoda HOM05D015656 ORTHO05D012968 2.3e-58 231.1 363 37.5
Pp3s169_60 Physcomitrium patens HOM05D003266 ORTHO05D012968 6.1e-35 153.3 298 32.9
Cre12.g492250 Chlamydomonas reinhardtii HOM05D015656 ORTHO05D012968 1.3e-21 109.0 502 23.3
Hma1.2p1_1689F.1_g297710 Hydrangea macrophylla HOM05D003266 ORTHO05D003718 5.5e-20 103.6 333 29.4
ATR0705G157 Amborella trichopoda HOM05D003266 ORTHO05D003718 2.6e-17 94.7 406 24.1
SMO356G0519 Selaginella moellendorffii HOM05D015656 ORTHO05D012968 4.4e-17 94.0 200 33.5
PRCOL_00000971 Prasinoderma coloniale HOM05D003266 ORTHO05D003718 2.2e-16 91.7 461 24.5
Nn2g12597 Nelumbo nucifera HOM05D003266 ORTHO05D003718 4.8e-16 90.5 394 26.1
Lalb_Chr24g0396021 Lupinus albus HOM05D003266 ORTHO05D003718 8.2e-16 89.7 333 25.5
Gohir.D01G054332 Gossypium hirsutum HOM05D003266 ORTHO05D003718 1.4e-15 89.0 368 25.3
AUR62022165 Chenopodium quinoa HOM05D003266 ORTHO05D003718 4.1e-15 87.4 322 26.7
Lj3g0015133 Lotus japonicus HOM05D003266 ORTHO05D003718 4.1e-15 87.4 328 25.3
MSTRG.22654 Avicennia marina HOM05D003266 ORTHO05D003718 9.1e-15 86.3 319 25.1
Gorai.002G074200 Gossypium raimondii HOM05D003266 ORTHO05D003718 9.1e-15 86.3 368 25.0
SEGI_12386 Sequoiadendron giganteum HOM05D003266 ORTHO05D003718 1.6e-14 85.5 344 25.0
Lalb_Chr22g0351451 Lupinus albus HOM05D003266 ORTHO05D003718 3.5e-14 84.3 331 26.3
CSS0038683 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 1.7e-13 82.0 339 27.4
ECA232G0114 Erigeron canadensis HOM05D003266 ORTHO05D003718 1.7e-13 82.0 384 25.8
GSVIVG01017040001 Vitis vinifera HOM05D003266 ORTHO05D003718 1.7e-13 82.0 327 24.5
TPR.G37248 Trifolium pratense HOM05D003266 ORTHO05D003718 3.8e-13 80.9 324 24.4
TAR383G0500 Trochodendron aralioides HOM05D003266 ORTHO05D003718 5.0e-13 80.5 368 25.5
Gohir.A10G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 6.5e-13 80.1 341 25.5
Medtr2g101390 Medicago truncatula HOM05D003266 ORTHO05D003718 6.5e-13 80.1 333 25.2
Aa31LG10G2720 Aethionema arabicum HOM05D003266 ORTHO05D003718 8.5e-13 79.7 331 24.5
AL1G60260 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 8.5e-13 79.7 342 24.9
C06p07410 Brassica napus HOM05D003266 ORTHO05D003718 1.1e-12 79.3 326 24.8
BolC6t35830H Brassica oleracea HOM05D003266 ORTHO05D003718 1.1e-12 79.3 326 24.8
Migut.I00926 Erythranthe guttata HOM05D003266 ORTHO05D003718 1.1e-12 79.3 322 25.5
PSO339G2930 Papaver somniferum HOM05D003266 ORTHO05D003718 1.9e-12 78.6 349 26.6
A06p02000 Brassica napus HOM05D003266 ORTHO05D003718 2.5e-12 78.2 326 24.8
BraA06t23416Z Brassica rapa HOM05D003266 ORTHO05D003718 2.5e-12 78.2 326 24.8
AUR62032438 Chenopodium quinoa HOM05D003266 ORTHO05D003718 4.2e-12 77.4 332 26.8
Zm00001eb339290 Zea mays HOM05D003266 ORTHO05D003718 4.2e-12 77.4 329 27.1
Carub.0001s4111 Capsella rubella HOM05D003266 ORTHO05D003718 5.5e-12 77.0 329 24.9
AUR62024783 Chenopodium quinoa HOM05D003266 ORTHO05D003718 7.2e-12 76.6 332 26.5
Psat5g297200 Pisum sativum HOM05D003266 ORTHO05D003718 7.2e-12 76.6 324 23.1
Solyc12g044370.3 Solanum lycopersicum HOM05D003266 ORTHO05D003718 1.6e-11 75.5 316 24.7
CANSAT56G3441 Cannabis sativa HOM05D003266 ORTHO05D003718 2.1e-11 75.1 371 23.2
Oeu062570.2 Olea europaea HOM05D003266 ORTHO05D003718 2.7e-11 74.7 327 24.5
Sopen12g022640 Solanum pennellii HOM05D003266 ORTHO05D003718 2.7e-11 74.7 316 24.7
Eucgr.J02950 Eucalyptus grandis HOM05D003266 ORTHO05D003718 4.7e-11 73.9 324 28.4
Thhalv10011231m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 4.7e-11 73.9 329 24.0
Sp1g38720 Schrenkiella parvula HOM05D003266 ORTHO05D003718 4.7e-11 73.9 341 24.3
EL10Ac2g02463 Beta vulgaris HOM05D003266 ORTHO05D003718 2.3e-10 71.6 322 26.1
Pp3c14_3370 Physcomitrium patens HOM05D003266 ORTHO05D003718 2.3e-10 71.6 319 26.0
ClCG09G001800 Citrullus lanatus HOM05D003266 ORTHO05D003718 5.2e-10 70.5 349 28.1
COL.COLO4_29286 Corchorus olitorius HOM05D003266 ORTHO05D003718 5.2e-10 70.5 340 22.9
Manes.11G036300 Manihot esculenta HOM05D003266 ORTHO05D003718 5.2e-10 70.5 307 28.3
Mapoly0010s0126 Marchantia polymorpha HOM05D003266 ORTHO05D036665 6.8e-10 70.1 318 23.3
Nitab4.5_0013558g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 6.8e-10 70.1 374 23.0
Potri.001G186900 Populus trichocarpa HOM05D003266 ORTHO05D003718 2.0e-09 68.6 353 27.5
Ca_01149_v3 Cicer arietinum L. HOM05D003266 ORTHO05D003718 2.6e-09 68.2 245 28.6
Glyma.15G017900 Glycine max HOM05D003266 ORTHO05D003718 4.4e-09 67.4 256 27.7
Nitab4.5_0003039g0050 Nicotiana tabacum HOM05D003266 ORTHO05D003718 4.4e-09 67.4 338 24.3
Phvul.005G170100 Phaseolus vulgaris HOM05D003266 ORTHO05D003718 4.4e-09 67.4 263 27.4
Lj5C56T10 Lonicera japonica HOM05D003266 ORTHO05D003718 5.7e-09 67.0 311 25.1
Sed0017993 Sechium edule HOM05D003266 ORTHO05D003718 5.7e-09 67.0 319 26.0
CBR_g8326 Chara braunii HOM05D003266 ORTHO05D003718 7.5e-09 66.6 406 23.9
CsaV3_7G033540 Cucumis sativus L. HOM05D003266 ORTHO05D003718 7.5e-09 66.6 355 25.6
EL10Ac9g22044 Beta vulgaris HOM05D003266 ORTHO05D003718 9.8e-09 66.2 346 24.0
CAN.G641.60 Capsicum annuum HOM05D003266 ORTHO05D003718 9.8e-09 66.2 155 30.3
AT1G52160 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 1.3e-08 65.9 293 25.9
HanXRQChr09g0275951 Helianthus annuus HOM05D003266 ORTHO05D003718 1.3e-08 65.9 323 26.3
VMungo1080G0852 Vigna mungo HOM05D003266 ORTHO05D003718 1.3e-08 65.9 317 28.4
AT3G16260 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 1.7e-08 65.5 233 27.5
CARHR042320 Cardamine hirsuta HOM05D003266 ORTHO05D003718 2.2e-08 65.1 241 25.7
Lj9C510G10 Lonicera japonica HOM05D003266 ORTHO05D003718 2.2e-08 65.1 228 27.6
Hund06647 Selenicereus undatus HOM05D003266 ORTHO05D003718 2.2e-08 65.1 250 28.8
Nitab4.5_0000571g0240 Nicotiana tabacum HOM05D003266 ORTHO05D003718 2.8e-08 64.7 219 27.4
Sopen00g008370 Solanum pennellii HOM05D003266 ORTHO05D003718 2.8e-08 64.7 283 24.4
Glyma.13G356200 Glycine max HOM05D003266 ORTHO05D003718 3.7e-08 64.3 256 27.3
Oeu040356.1 Olea europaea HOM05D003266 ORTHO05D003718 3.7e-08 64.3 219 27.4
BcaB06g25715 Brassica carinata HOM05D003266 ORTHO05D003718 4.8e-08 63.9 352 25.0
Cre01.g039900 Chlamydomonas reinhardtii HOM05D003266 ORTHO05D003718 4.8e-08 63.9 367 24.5
Pp3c18_12540 Physcomitrium patens HOM05D003266 ORTHO05D003718 4.8e-08 63.9 323 21.4
AL3G29000 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 6.3e-08 63.5 353 25.5
Sabra01G0153400 Salix brachista HOM05D003266 ORTHO05D003718 6.3e-08 63.5 327 24.8
Duzib160G0509 Durio zibethinus HOM05D003266 ORTHO05D003718 8.3e-08 63.2 365 26.6
Nitab4.5_0001147g0060 Nicotiana tabacum HOM05D003266 ORTHO05D003718 8.3e-08 63.2 279 25.4
PGSC0003DMG401002553 Solanum tuberosum HOM05D003266 ORTHO05D003718 8.3e-08 63.2 338 24.0
BcaC05g28901 Brassica carinata HOM05D003266 ORTHO05D003718 1.1e-07 62.8 283 25.8
A05p33260 Brassica napus HOM05D003266 ORTHO05D003718 1.1e-07 62.8 283 25.8
BraA05t22151Z Brassica rapa HOM05D003266 ORTHO05D003718 1.1e-07 62.8 283 25.8
CARHR091470 Cardamine hirsuta HOM05D003266 ORTHO05D003718 1.1e-07 62.8 363 25.6
Peaxi162Scf00015g00241 Petunia axillaris HOM05D003266 ORTHO05D003718 1.4e-07 62.4 216 26.9
Ah.01g021810 Amaranthus hybridus HOM05D003266 ORTHO05D003718 1.8e-07 62.0 360 24.7
Ciclev10024815m.g Citrus clementina HOM05D003266 ORTHO05D003718 1.8e-07 62.0 241 28.6
PGR102G0722 Punica granatum HOM05D003266 ORTHO05D003718 2.4e-07 61.6 332 25.3
Atru.chr1.3468 Acer truncatum HOM05D003266 ORTHO05D003718 3.1e-07 61.2 290 26.2
Aqoxy5G00790 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 4.1e-07 60.8 253 26.5
arahy.Tifrunner.gnm1.ann1.X5C2Q6 Arachis hypogaea HOM05D003266 ORTHO05D003718 4.1e-07 60.8 504 24.2
Cfa002112 Carpinus fangiana HOM05D003266 ORTHO05D003718 4.1e-07 60.8 252 25.4
FAN05G1225 Fragaria x ananassa HOM05D003266 ORTHO05D003718 4.1e-07 60.8 324 24.1
Gohir.A01G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 4.1e-07 60.8 224 27.7
Lsat_1_v5_gn_4_100861 Lactuca sativa HOM05D003266 ORTHO05D003718 4.1e-07 60.8 348 24.4
SalBow2G0145 Salvia bowleyana HOM05D003266 ORTHO05D003718 4.1e-07 60.8 216 26.9
Sp3g14630 Schrenkiella parvula HOM05D003266 ORTHO05D003718 4.1e-07 60.8 380 24.7
TAR626G0182 Trochodendron aralioides HOM05D003266 ORTHO05D003718 4.1e-07 60.8 276 24.3
Sopen10g030300 Solanum pennellii HOM05D003266 ORTHO05D003718 5.4e-07 60.5 291 24.4
Thecc.06G095700 Theobroma cacao HOM05D003266 ORTHO05D003718 5.4e-07 60.5 365 24.9
BcaC08g43373 Brassica carinata HOM05D003266 ORTHO05D003718 7.0e-07 60.1 286 26.2
CSS0038057 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 7.0e-07 60.1 333 25.5
Rhsim08G0225600 Rhododendron simsii HOM05D003266 ORTHO05D003718 7.0e-07 60.1 346 26.9
Sed0020980 Sechium edule HOM05D003266 ORTHO05D003718 7.0e-07 60.1 308 27.3
C05p50250 Brassica napus HOM05D003266 ORTHO05D003718 1.2e-06 59.3 289 24.9
BolC5t33776H Brassica oleracea HOM05D003266 ORTHO05D003718 1.2e-06 59.3 289 24.9
Cre09.g394700 Chlamydomonas reinhardtii HOM05D015656 ORTHO05D012968 1.2e-06 59.3 136 27.9
MELO3C024265.2 Cucumis melo HOM05D003266 ORTHO05D003718 1.2e-06 59.3 386 24.1
Carub.0003s1601 Capsella rubella HOM05D003266 ORTHO05D003718 1.6e-06 58.9 352 26.1
Nitab4.5_0006202g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.6e-06 58.9 108 35.2
Solyc03g120470.4 Solanum lycopersicum HOM05D003266 ORTHO05D003718 1.6e-06 58.9 306 23.9
AUR62031873 Chenopodium quinoa HOM05D003266 ORTHO05D003718 2.0e-06 58.5 316 25.3
THA.LOC104817970 Tarenaya hassleriana HOM05D003266 ORTHO05D003718 3.5e-06 57.8 410 24.6
PSO210G6470 Papaver somniferum HOM05D003266 ORTHO05D003718 7.7e-06 56.6 348 25.3


User provided reference genes

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