Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 2025.8 1028 100.0
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1259.2 1032 64.9
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 0.0e+00 1246.5 1022 61.6
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 0.0e+00 1226.5 1033 62.8
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1150.2 1020 57.9
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1148.3 1020 58.7
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1142.1 1031 58.7
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1141.7 1025 58.7
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1140.2 1022 58.1
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1139.8 1020 58.1
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1139.4 1021 58.3
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1139.0 1019 58.5
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1138.6 1022 57.9
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1135.6 1022 57.8
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1134.8 1023 58.3
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1134.0 1023 58.2
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1133.6 1034 58.3
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1133.6 1021 57.5
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1133.2 1031 57.6
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1132.9 1021 57.5
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1132.5 1034 58.3
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1132.1 1023 58.7
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1131.7 1018 57.4
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1131.7 1026 57.9
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1129.8 1027 58.2
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1129.0 1025 57.9
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1127.9 1023 57.3
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1127.9 1020 58.2
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1127.5 1023 57.5
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1127.1 1026 57.7
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1125.9 1020 57.8
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1125.2 1020 58.3
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1124.0 1028 57.6
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1123.6 1021 57.3
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1122.1 1023 57.8
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1121.3 1019 57.8
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1120.5 1026 57.5
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1120.1 1026 57.8
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1119.0 1023 57.8
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1117.8 1054 56.6
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1117.4 1031 58.0
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1116.7 1023 57.3
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1116.3 1027 57.9
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1115.1 1026 56.7
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1114.4 1024 56.5
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1113.6 1040 56.7
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1113.2 1027 57.4
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1113.2 1024 57.8
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1112.4 1031 57.1
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1111.3 1026 56.9
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1110.9 1030 57.2
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1110.9 1023 56.7
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1110.9 1021 57.0
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1110.5 1022 57.1
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1107.8 1027 57.4
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1107.4 1027 57.3
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1107.4 1023 57.1
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1107.4 1022 57.3
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1105.9 1037 57.4
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1105.1 1021 57.3
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1102.4 1028 57.2
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1100.1 1028 56.9
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1100.1 1073 54.7
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1099.7 1028 56.8
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1099.0 1024 57.3
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1097.8 1025 56.6
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1096.6 1027 55.8
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1095.5 1027 56.3
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1094.7 1026 56.4
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1094.3 1034 56.3
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1094.3 1034 56.3
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1093.6 1028 56.7
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1092.4 1024 57.0
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1092.0 1030 56.1
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1091.6 1028 56.5
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1090.9 1024 55.7
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1090.5 1029 56.1
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1090.5 1029 56.1
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1090.5 1020 56.5
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1090.1 1022 56.3
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1089.3 1033 56.4
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1089.3 1021 56.4
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1088.6 1024 56.1
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1087.8 1021 56.6
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1086.6 1032 56.0
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1085.9 1028 56.5
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1085.1 1029 56.0
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1083.9 1024 56.5
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1082.0 1022 56.2
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1081.6 1026 56.2
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1081.2 1026 56.2
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1078.9 1029 55.9
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1078.2 1022 55.6
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1077.8 1039 55.1
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1077.0 1027 56.1
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1076.6 1063 54.8
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 1.4e-311 1073.2 1036 56.0
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 3.5e-311 1071.6 1022 55.8
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.1e-310 1068.5 1067 54.1
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 5.3e-310 1067.8 1043 55.2
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 9.1e-310 1067.0 1022 55.7
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.6e-309 1065.4 1066 54.2
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 1.8e-305 1052.7 1128 51.4
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 5.2e-305 1051.2 1026 55.8
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 2.6e-304 1048.9 1029 53.6
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 3.8e-300 1035.0 1025 54.2
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 9.1e-294 1013.8 966 54.6
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 8.0e-290 1000.7 825 62.5
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 4.1e-286 988.4 903 57.6
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 4.1e-286 988.4 915 57.3
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.5e-283 979.9 967 53.7
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 1.2e-277 960.3 1027 51.8
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 2.1e-274 949.5 1017 51.0
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 1.6e-269 933.3 903 55.1
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 8.9e-265 917.5 1030 49.8
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 1.4e-262 910.2 1022 49.3
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 6.4e-239 831.6 716 59.5
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 1.1e-238 830.9 716 59.5
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 2.4e-233 813.1 739 58.1
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 9.3e-214 748.0 582 64.6
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 1.6e-213 747.3 623 61.8
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 4.2e-206 722.6 1050 42.8
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.1e-205 718.8 1019 42.3
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 2.8e-202 709.9 1045 42.8
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-200 704.5 1049 42.0
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 2.0e-200 703.7 1059 41.2
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-193 681.0 973 42.4
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.2e-186 657.1 553 61.5
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 4.1e-185 652.9 499 64.3
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.7e-183 647.5 453 71.1
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 4.2e-166 589.7 423 70.4
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.4e-153 548.1 441 63.3
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 4.6e-152 543.1 1045 36.1
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 7.8e-152 542.3 402 65.7
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.3e-146 525.0 471 58.6
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 9.5e-142 508.8 1032 35.2
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 7.8e-136 489.2 357 68.9
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 3.5e-128 463.8 1061 33.3
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.1e-116 425.6 320 68.4
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-115 421.8 386 56.7
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-115 420.6 371 57.4
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-115 420.6 371 57.4
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 9.0e-108 396.0 519 45.9
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.9e-106 391.0 376 57.2
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-100 372.5 592 39.9
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 2.0e-99 368.2 452 46.0
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.3e-95 355.5 413 47.9
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 9.4e-89 332.8 506 42.7
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 9.4e-89 332.8 669 33.9
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.8e-84 318.5 570 37.0
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 6.5e-74 283.5 198 71.2
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-71 275.0 203 66.5
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 9.4e-57 226.5 291 43.6
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 7.5e-54 216.9 282 44.0
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 3.5e-51 208.0 376 35.6
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.4e-47 196.1 139 69.8
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 7.8e-43 180.3 188 51.6
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.6e-41 174.1 305 34.8
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.6e-40 172.6 187 50.8
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 8.0e-40 170.2 288 37.8
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 1.3e-37 162.9 167 55.7
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 1.1e-33 149.8 398 29.6
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 7.5e-30 137.1 97 71.1
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.9e-29 134.4 227 38.8
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 8.3e-29 133.7 147 53.1
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.0e-27 127.5 221 38.9
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-26 125.6 170 48.2
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-24 119.8 127 49.6
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 6.2e-24 117.5 131 48.1
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 8.9e-23 113.6 253 33.6
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.5e-22 112.8 81 66.7
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.1e-16 92.4 92 52.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.4e-14 85.1 71 56.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.3e-09 68.6 67 49.3
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 8.1e-08 63.9 266 24.8


User provided reference genes

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