Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 1.1e-259 899.4 463 100.0
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 4.6e-168 595.1 464 65.3
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 7.6e-147 524.6 455 55.8
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.2e-146 523.1 457 56.0
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 2.9e-146 522.7 454 56.8
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 1.1e-145 520.8 455 55.4
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 3.2e-145 519.2 455 55.4
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 4.1e-145 518.8 454 54.6
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 5.4e-145 518.5 455 55.6
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 1.6e-144 516.9 456 55.5
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 2.1e-144 516.5 473 53.9
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 3.5e-144 515.8 455 55.2
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 6.0e-144 515.0 455 54.3
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 1.0e-143 514.2 453 54.5
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 1.0e-143 514.2 457 54.5
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 1.0e-143 514.2 455 53.6
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 1.0e-143 514.2 455 53.6
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 1.7e-143 513.5 455 54.1
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 1.7e-143 513.5 455 54.7
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 2.3e-143 513.1 455 55.6
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 3.0e-143 512.7 456 54.6
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 3.0e-143 512.7 455 54.1
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 5.1e-143 511.9 456 55.5
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 8.6e-143 511.1 455 56.7
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 1.5e-142 510.4 456 54.2
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 4.3e-142 508.8 455 53.0
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 7.3e-142 508.1 456 54.8
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 2.1e-141 506.5 455 53.4
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 3.6e-141 505.8 455 53.6
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 6.2e-141 505.0 455 52.7
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 3.1e-140 502.7 455 52.5
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 4.0e-140 502.3 454 54.2
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 4.0e-140 502.3 455 53.4
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 5.2e-140 501.9 461 52.5
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 8.9e-140 501.1 469 52.7
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 1.5e-139 500.4 455 51.9
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 1.5e-139 500.4 455 52.3
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 2.6e-139 499.6 457 53.0
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 3.4e-139 499.2 455 54.1
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 5.8e-139 498.4 456 52.9
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 5.8e-139 498.4 455 53.0
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 1.3e-138 497.3 455 53.2
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 2.2e-138 496.5 455 52.1
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 2.9e-138 496.1 462 53.2
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 1.9e-137 493.4 455 52.5
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 2.4e-137 493.0 455 51.4
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 2.4e-137 493.0 455 52.7
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 3.2e-137 492.7 489 51.3
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 5.4e-137 491.9 458 52.8
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.6e-136 490.3 462 52.6
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 2.1e-136 490.0 456 51.8
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 3.5e-136 489.2 456 51.3
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 3.5e-136 489.2 486 50.0
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 6.0e-136 488.4 458 53.1
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 7.8e-136 488.0 456 51.5
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 7.8e-136 488.0 456 51.8
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 7.8e-136 488.0 456 51.5
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 7.8e-136 488.0 457 54.3
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.3e-135 487.3 471 51.8
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 1.7e-135 486.9 456 51.3
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 1.7e-135 486.9 456 52.9
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 2.3e-135 486.5 456 51.1
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 5.1e-135 485.3 458 52.2
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 3.3e-134 482.6 457 51.0
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.3e-133 480.7 462 52.2
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 2.1e-133 479.9 456 51.3
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 3.1e-132 476.1 449 51.2
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 5.3e-132 475.3 453 51.7
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 9.0e-132 474.6 468 51.7
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 2.9e-130 469.5 455 52.5
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 6.4e-130 468.4 480 49.0
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 1.1e-129 467.6 489 49.1
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 1.9e-129 466.8 456 51.5
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 3.2e-129 466.1 474 50.4
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 1.6e-128 463.8 462 50.6
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 1.5e-126 457.2 453 50.1
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 7.4e-126 454.9 484 49.2
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 7.4e-126 454.9 455 49.5
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 5.3e-124 448.7 483 48.7
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 2.0e-123 446.8 461 49.7
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 4.5e-123 445.7 455 49.0
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.4e-121 440.7 412 53.6
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 9.3e-121 438.0 417 52.5
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 6.0e-120 435.3 453 49.0
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 1.2e-115 421.0 406 50.7
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 3.4e-115 419.5 516 42.8
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 4.5e-115 419.1 445 47.0
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 7.6e-115 418.3 557 42.5
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 2.5e-113 413.3 389 52.4
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 4.2e-113 412.5 517 43.1
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 2.7e-112 409.8 405 51.4
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 1.6e-109 400.6 498 43.8
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 6.3e-109 398.7 453 46.1
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 1.2e-107 394.4 455 44.0
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.5e-107 394.0 497 43.1
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 2.0e-107 393.7 457 45.3
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 5.0e-106 389.0 455 42.9
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.4e-105 387.5 447 47.7
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 1.9e-105 387.1 360 51.9
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 2.3e-103 380.2 489 42.3
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 3.0e-103 379.8 330 55.8
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.6e-99 366.7 341 53.1
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.4e-87 327.8 420 42.4
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 1.1e-86 324.7 295 53.2
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 1.1e-84 318.2 295 52.5
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 6.5e-82 308.9 513 35.5
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 1.8e-76 290.8 226 61.1
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.5e-73 281.2 270 51.5
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.7e-72 276.9 345 44.9
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 4.5e-67 259.6 264 49.6
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 4.5e-67 259.6 510 34.3
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.7e-66 257.7 460 33.9
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 2.8e-64 250.4 548 31.0
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.3e-63 247.3 234 53.8
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 1.4e-60 238.0 441 32.4
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 5.0e-58 229.6 458 32.1
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 8.9e-55 218.8 208 52.4
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 7.3e-49 199.1 258 45.7
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 1.0e-47 195.3 296 38.2
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 8.6e-42 175.6 182 48.9
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 1.1e-41 175.3 150 52.7
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 1.6e-40 171.4 173 49.1
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 2.8e-40 170.6 241 40.7
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 3.3e-33 147.1 332 30.7
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 7.6e-30 136.0 129 50.4
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.9e-29 134.0 109 56.9
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.9e-29 134.0 109 56.9
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.8e-29 133.7 119 52.9
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.8e-24 117.5 103 53.4
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.2e-21 107.8 96 51.0
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 4.6e-19 100.1 113 50.4
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.4e-15 88.6 81 49.4
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.2e-12 77.0 61 54.1
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 4.6e-11 73.6 58 53.4
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 2.3e-10 71.2 189 29.1
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 8.7e-10 69.3 73 49.3
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.9e-09 68.2 70 50.0
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 9.6e-09 65.9 54 53.7
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.1e-08 64.7 70 47.1
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 1.5e-06 58.5 57 43.9
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.0e-06 58.2 51 51.0
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 7.6e-06 56.2 61 42.6


User provided reference genes

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