Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 4.2e-245 850.9 419 100.0
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.0e-163 578.6 343 79.3
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 7.0e-160 567.8 417 68.6
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 5.0e-158 561.6 433 67.0
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.2e-151 540.4 353 72.2
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 7.8e-151 537.7 357 71.7
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 7.8e-151 537.7 338 73.7
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.0e-150 537.3 333 74.2
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 1.0e-150 537.3 334 75.4
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.3e-150 537.0 357 72.0
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 1.3e-150 537.0 357 70.9
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.3e-150 536.2 333 73.9
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 2.3e-150 536.2 340 73.2
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.0e-150 535.8 378 66.9
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 3.9e-150 535.4 343 74.6
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 3.9e-150 535.4 334 74.9
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 5.1e-150 535.0 333 75.1
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 8.6e-150 534.3 348 73.0
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.1e-149 533.9 337 74.5
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.5e-149 533.5 360 70.0
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.5e-149 533.5 336 74.1
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.9e-149 533.1 417 64.0
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 1.9e-149 533.1 334 74.6
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 2.5e-149 532.7 349 71.9
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.5e-149 532.7 400 67.8
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 2.5e-149 532.7 353 70.8
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 4.3e-149 531.9 342 72.8
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 4.3e-149 531.9 337 73.9
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 4.3e-149 531.9 360 71.1
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 4.3e-149 531.9 364 70.3
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 5.6e-149 531.6 336 74.1
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 5.6e-149 531.6 348 73.0
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 5.6e-149 531.6 334 74.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 7.3e-149 531.2 347 71.2
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 7.3e-149 531.2 336 73.8
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 7.3e-149 531.2 395 66.6
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 7.3e-149 531.2 333 74.8
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 9.5e-149 530.8 333 74.2
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.2e-148 530.4 335 73.7
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.2e-148 530.4 346 71.7
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 1.6e-148 530.0 337 73.3
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.6e-148 530.0 331 75.2
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.6e-148 530.0 337 73.9
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.6e-148 530.0 348 72.7
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.6e-148 530.0 338 74.9
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.6e-148 530.0 359 70.8
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 2.1e-148 529.6 363 70.2
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 3.6e-148 528.9 357 70.9
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 3.6e-148 528.9 350 72.3
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 4.7e-148 528.5 348 71.3
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 4.7e-148 528.5 402 66.4
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 4.7e-148 528.5 337 73.0
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 4.7e-148 528.5 357 70.6
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 4.7e-148 528.5 336 73.5
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 6.2e-148 528.1 337 73.0
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 6.2e-148 528.1 336 74.1
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.1e-147 527.3 333 74.2
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.1e-147 527.3 333 74.2
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.1e-147 527.3 333 74.2
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.1e-147 527.3 355 69.9
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.4e-147 526.9 360 70.3
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.4e-147 526.9 333 73.9
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.4e-147 526.9 333 74.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.8e-147 526.6 343 72.0
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.8e-147 526.6 342 72.5
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 2.3e-147 526.2 340 72.9
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 2.3e-147 526.2 339 72.3
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 2.3e-147 526.2 340 73.8
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 3.1e-147 525.8 335 73.1
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.1e-147 525.8 351 70.7
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 3.1e-147 525.8 339 72.3
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 5.2e-147 525.0 338 72.5
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 5.2e-147 525.0 337 72.7
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 5.2e-147 525.0 338 72.5
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 5.2e-147 525.0 338 72.5
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 5.2e-147 525.0 337 72.7
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 6.8e-147 524.6 337 72.4
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 8.9e-147 524.2 335 72.8
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 8.9e-147 524.2 337 72.4
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 8.9e-147 524.2 334 73.4
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.2e-146 523.9 404 64.4
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 2.0e-146 523.1 369 68.0
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 4.4e-146 521.9 337 72.1
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 5.8e-146 521.5 383 67.4
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 5.8e-146 521.5 340 72.6
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 9.9e-146 520.8 345 72.2
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 9.9e-146 520.8 301 78.1
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.3e-145 520.4 365 69.0
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 2.9e-145 519.2 335 71.9
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 4.9e-145 518.5 349 69.3
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-144 517.3 333 71.8
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 1.4e-144 516.9 390 65.1
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.9e-144 516.5 399 65.2
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 2.4e-144 516.2 338 71.0
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 3.2e-144 515.8 338 72.8
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 4.1e-144 515.4 337 71.8
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 7.1e-144 514.6 403 65.0
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.6e-143 513.5 407 63.4
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.6e-143 513.5 405 64.4
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 2.7e-143 512.7 350 68.0
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 7.8e-143 511.1 379 65.4
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 5.1e-142 508.4 341 70.4
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.1e-142 508.4 300 77.3
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 6.6e-142 508.1 307 76.5
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.5e-141 506.9 333 71.8
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.2e-140 503.8 399 62.4
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 4.7e-140 501.9 295 78.3
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.1e-139 500.7 361 66.8
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.5e-138 496.9 327 73.4
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.8e-137 492.3 315 73.7
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 8.4e-137 491.1 339 67.6
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 5.4e-136 488.4 339 69.3
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 7.1e-136 488.0 362 65.5
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 3.9e-134 482.3 315 71.4
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.1e-133 480.7 354 67.5
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.1e-132 476.5 306 70.3
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.1e-131 474.2 362 64.6
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 3.4e-130 469.2 367 64.3
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.4e-128 463.8 496 50.2
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 9.3e-128 461.1 346 61.8
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.5e-125 453.8 338 66.3
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 3.3e-125 452.6 396 58.1
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 3.7e-124 449.1 549 45.7
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 3.1e-123 446.0 556 45.9
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 7.4e-117 424.9 242 78.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 6.0e-111 405.2 271 68.3
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 8.2e-108 394.8 396 54.8
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 5.3e-107 392.1 348 58.0
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 4.2e-104 382.5 313 57.8
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.3e-97 360.9 287 62.4
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 2.6e-93 346.7 245 68.6
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.2e-87 327.8 217 71.0
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 1.8e-86 323.9 287 52.3
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 3.0e-86 323.2 211 71.1
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.3e-81 307.8 225 64.4
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.8e-76 290.0 198 66.2
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 9.8e-69 265.0 319 46.7
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 3.1e-67 260.0 318 42.8
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 1.6e-66 257.7 339 40.1
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.7e-65 254.2 321 41.7
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.2e-63 248.1 183 66.1
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.8e-63 246.9 316 40.8
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.2e-58 231.5 310 38.4
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 5.6e-56 222.6 126 81.0
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.1e-55 220.7 323 40.6
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 5.6e-48 196.1 247 41.3
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.4e-43 180.6 179 54.2
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.7e-39 166.4 113 68.1
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 3.7e-36 156.8 164 54.9
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 5.8e-21 106.3 92 58.7
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 1.7e-20 104.8 56 80.4
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 4.3e-16 90.1 62 75.8
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 8.1e-15 85.9 51 66.7
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 3.8e-12 77.0 83 53.0
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 1.1e-11 75.5 48 68.8
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 4.6e-10 70.1 40 75.0
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 3.7e-07 60.5 29 79.3
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 3.7e-07 60.5 111 37.8


User provided reference genes

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