Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 3.5e-198 694.9 379 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.7e-99 367.1 323 63.2
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 1.8e-90 337.0 325 61.2
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.3e-88 330.9 301 57.1
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 2.5e-87 326.6 315 58.4
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 5.5e-87 325.5 301 57.8
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 2.1e-86 323.6 301 56.1
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 2.1e-86 323.6 300 58.3
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 2.7e-86 323.2 323 54.2
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 4.7e-86 322.4 325 53.8
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 8.0e-86 321.6 301 55.8
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 8.0e-86 321.6 293 59.4
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 8.0e-86 321.6 316 54.7
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.8e-85 320.5 288 60.8
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.8e-85 320.5 327 56.3
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.2e-85 318.9 327 56.0
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 6.7e-85 318.5 327 56.0
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 1.1e-84 317.8 296 58.1
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.1e-84 317.8 325 55.1
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 1.5e-84 317.4 296 57.1
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.5e-84 317.4 311 55.3
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 2.0e-84 317.0 296 55.7
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 2.0e-84 317.0 328 56.4
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 3.3e-84 316.2 334 54.2
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 4.4e-84 315.8 300 58.0
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 4.4e-84 315.8 301 58.5
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 5.7e-84 315.5 308 56.5
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 7.4e-84 315.1 296 56.4
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.4e-84 315.1 327 55.0
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 9.7e-84 314.7 324 55.2
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.3e-83 314.3 299 57.2
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.7e-83 313.9 295 57.3
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 1.7e-83 313.9 302 57.0
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.7e-83 313.9 326 54.6
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 2.8e-83 313.2 325 55.1
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 3.7e-83 312.8 296 56.1
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 3.7e-83 312.8 296 56.1
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 3.7e-83 312.8 288 58.0
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 3.7e-83 312.8 317 55.5
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 4.8e-83 312.4 305 54.8
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 4.8e-83 312.4 310 54.5
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 4.8e-83 312.4 323 55.4
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 4.8e-83 312.4 296 57.8
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 8.2e-83 311.6 291 57.4
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 8.2e-83 311.6 311 55.3
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-82 311.2 305 54.8
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.1e-82 311.2 305 54.8
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.1e-82 311.2 317 56.2
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.1e-82 311.2 296 56.4
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.1e-82 311.2 295 56.9
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 1.8e-82 310.5 356 51.7
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.8e-82 310.5 317 54.6
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 1.8e-82 310.5 312 56.7
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.4e-82 310.1 333 53.5
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 3.1e-82 309.7 295 57.3
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 3.1e-82 309.7 305 54.4
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 3.1e-82 309.7 305 54.8
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 4.1e-82 309.3 330 54.2
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 4.1e-82 309.3 322 55.9
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 5.3e-82 308.9 330 53.3
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 9.1e-82 308.1 327 53.2
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.2e-81 307.8 299 56.9
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 2.0e-81 307.0 344 52.6
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.0e-81 307.0 292 56.5
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.0e-81 307.0 295 56.9
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.6e-81 306.6 317 54.3
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 2.6e-81 306.6 330 53.6
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 2.6e-81 306.6 299 55.9
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 3.5e-81 306.2 315 55.6
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 3.5e-81 306.2 299 55.9
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 4.5e-81 305.8 324 54.3
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 4.5e-81 305.8 341 51.6
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.0e-80 304.7 296 54.7
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.0e-80 304.7 296 54.7
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 1.0e-80 304.7 323 53.6
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 1.0e-80 304.7 299 55.5
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.3e-80 304.3 316 55.1
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.3e-80 304.3 289 57.4
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 1.7e-80 303.9 317 54.6
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 1.7e-80 303.9 316 54.7
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 3.8e-80 302.8 298 55.0
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 6.5e-80 302.0 288 56.6
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 6.5e-80 302.0 323 52.3
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 1.1e-79 301.2 322 53.1
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.5e-79 300.8 300 57.0
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.9e-79 300.4 328 52.7
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.9e-79 300.4 330 53.3
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.5e-79 300.1 343 50.7
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.5e-79 300.1 247 64.0
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 3.2e-79 299.7 295 55.6
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.2e-79 299.3 321 53.0
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.5e-79 298.9 324 52.8
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 7.2e-79 298.5 324 52.8
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 7.2e-79 298.5 302 55.0
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 9.4e-79 298.1 322 53.4
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 9.4e-79 298.1 316 54.4
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 9.4e-79 298.1 324 52.2
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.2e-78 297.7 322 53.4
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 1.2e-78 297.7 321 53.6
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 2.1e-78 297.0 289 54.7
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.1e-78 297.0 321 52.6
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.6e-78 296.2 293 54.6
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 6.1e-78 295.4 324 51.9
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 8.0e-78 295.0 294 54.1
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 8.0e-78 295.0 328 53.4
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.0e-77 294.7 322 52.5
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.8e-77 293.9 296 54.7
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 1.8e-77 293.9 288 54.5
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 2.3e-77 293.5 290 56.9
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 3.0e-77 293.1 330 50.9
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-76 290.8 314 51.9
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.5e-76 290.8 311 52.1
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 2.0e-76 290.4 298 53.4
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 2.6e-76 290.0 321 52.0
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 3.3e-76 289.7 323 51.7
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.3e-75 287.7 299 52.5
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 2.2e-75 287.0 286 57.0
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.8e-75 286.6 254 59.8
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 4.8e-75 285.8 359 47.9
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 5.3e-74 282.3 318 55.0
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.6e-73 280.8 333 50.5
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 2.7e-73 280.0 325 51.7
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 7.7e-73 278.5 289 54.0
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.3e-72 277.7 305 53.1
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 2.9e-72 276.6 390 44.6
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 3.8e-72 276.2 325 49.5
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.1e-71 274.6 289 53.6
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 4.2e-71 272.7 391 43.0
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 6.3e-67 258.8 345 46.4
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 2.9e-64 250.0 288 49.3
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.5e-63 247.7 331 48.3
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 2.5e-63 246.9 273 51.6
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 7.2e-63 245.4 311 47.9
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.8e-61 240.7 298 45.6
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 2.3e-61 240.4 305 46.2
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 8.9e-61 238.4 300 47.0
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 5.9e-57 225.7 293 45.1
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.3e-56 224.6 298 47.7
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.6e-54 217.6 329 44.7
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 4.7e-54 216.1 256 46.9
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 1.0e-53 214.9 210 57.1
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 4.9e-51 206.1 183 60.7
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 6.6e-48 195.7 169 61.5
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-46 191.4 240 47.9
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.4e-42 177.2 170 58.2
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 8.6e-40 168.7 161 57.1
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 3.1e-37 160.2 151 53.6
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.7e-35 154.5 367 37.9
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.7e-35 153.3 139 61.2
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 3.0e-32 143.7 325 36.0
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 4.3e-31 139.8 346 35.3
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 4.7e-30 136.3 162 50.0
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 3.1e-29 133.7 163 55.2
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 6.4e-27 125.9 104 63.5
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-25 121.7 119 54.6
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.1e-25 120.9 170 48.2
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 6.6e-24 115.9 88 69.3
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.0e-16 92.0 116 50.0
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 5.1e-16 89.7 98 51.0
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 7.1e-10 69.3 79 44.3
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 5.1e-08 63.2 128 35.9
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 6.7e-08 62.8 73 45.2


User provided reference genes

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