Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 1.6e-143 512.7 250 100.0
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 8.3e-100 367.5 245 67.8
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 1.1e-94 350.5 245 68.2
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 6.9e-86 321.2 238 60.9
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 5.8e-85 318.2 240 60.4
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 1.0e-73 280.8 228 55.3
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 1.0e-73 280.8 229 54.6
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 1.3e-73 280.4 229 55.5
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 1.1e-72 277.3 234 54.3
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.5e-72 276.2 229 56.3
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 7.4e-72 274.6 229 55.9
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 9.6e-72 274.2 229 55.0
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.6e-71 273.5 229 55.0
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.6e-71 273.5 231 53.7
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 1.6e-71 273.5 229 54.1
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 2.1e-71 273.1 228 53.5
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 2.1e-71 273.1 229 53.7
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 2.8e-71 272.7 234 52.6
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 6.2e-71 271.6 229 54.1
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 8.1e-71 271.2 239 51.9
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 1.1e-70 270.8 228 53.1
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 1.4e-70 270.4 228 53.5
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.4e-70 270.4 229 53.3
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 1.8e-70 270.0 234 51.7
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.8e-70 270.0 229 54.1
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.8e-70 270.0 229 54.1
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 1.8e-70 270.0 229 54.1
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 1.8e-70 270.0 229 54.1
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 1.8e-70 270.0 229 54.1
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 2.4e-70 269.6 229 53.7
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 2.4e-70 269.6 229 52.8
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 3.1e-70 269.2 228 53.9
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 3.1e-70 269.2 228 54.8
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 4.0e-70 268.9 228 54.8
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 5.3e-70 268.5 229 52.8
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 5.3e-70 268.5 234 52.1
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 9.0e-70 267.7 243 50.6
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 1.2e-69 267.3 242 51.2
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 1.2e-69 267.3 229 53.3
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.5e-69 266.9 227 53.3
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.5e-69 266.9 228 54.4
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 2.0e-69 266.5 228 51.8
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.0e-69 266.5 229 53.7
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.0e-69 266.5 229 53.7
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 2.0e-69 266.5 230 53.0
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 2.6e-69 266.2 229 51.5
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 3.4e-69 265.8 228 52.2
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 4.5e-69 265.4 229 52.4
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 4.5e-69 265.4 229 52.8
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 7.6e-69 264.6 228 51.3
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 7.6e-69 264.6 226 54.0
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 7.6e-69 264.6 229 52.4
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 9.9e-69 264.2 230 53.5
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 9.9e-69 264.2 228 50.4
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 9.9e-69 264.2 228 51.3
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 2.9e-68 262.7 228 51.8
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 2.9e-68 262.7 228 52.2
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 3.8e-68 262.3 229 52.4
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 3.8e-68 262.3 230 52.2
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 3.8e-68 262.3 227 50.2
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 6.4e-68 261.5 240 51.7
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 8.4e-68 261.2 228 52.6
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 8.4e-68 261.2 229 51.1
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 8.4e-68 261.2 238 50.8
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 1.1e-67 260.8 225 52.4
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 1.4e-67 260.4 229 51.1
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 1.4e-67 260.4 228 51.8
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 1.9e-67 260.0 228 50.9
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.4e-67 259.6 229 50.7
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 2.4e-67 259.6 228 50.0
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 2.4e-67 259.6 230 50.4
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 4.2e-67 258.8 223 52.9
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 4.2e-67 258.8 228 50.9
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 5.5e-67 258.5 228 52.2
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 5.5e-67 258.5 229 50.7
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 7.1e-67 258.1 229 52.0
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 9.3e-67 257.7 230 51.7
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 9.3e-67 257.7 228 50.9
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 9.3e-67 257.7 229 50.2
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 1.2e-66 257.3 228 51.3
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 1.2e-66 257.3 228 50.4
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.6e-66 256.9 229 50.7
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 1.6e-66 256.9 228 50.0
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 2.1e-66 256.5 222 53.6
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 2.1e-66 256.5 228 50.4
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 3.5e-66 255.8 228 51.3
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 1.3e-65 253.8 228 52.2
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 1.8e-65 253.4 228 50.0
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 1.8e-65 253.4 231 51.1
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 2.3e-65 253.1 229 53.3
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 2.3e-65 253.1 234 50.9
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 3.0e-65 252.7 228 50.4
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 3.9e-65 252.3 228 49.6
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 3.9e-65 252.3 228 49.6
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 3.9e-65 252.3 228 49.6
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 6.7e-65 251.5 229 51.1
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 8.7e-65 251.1 227 50.2
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 1.5e-64 250.4 214 53.3
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 1.5e-64 250.4 229 48.0
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.5e-64 249.6 228 50.4
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 3.3e-64 249.2 221 50.7
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 4.3e-64 248.8 229 47.6
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.6e-64 248.4 221 50.7
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 7.4e-64 248.1 225 49.3
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.3e-63 247.3 229 48.5
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.6e-63 246.9 221 51.6
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 1.6e-63 246.9 224 52.2
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.1e-63 246.5 228 49.6
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 3.7e-63 245.7 228 47.8
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 8.1e-63 244.6 229 48.9
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 1.8e-62 243.4 222 49.5
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 2.4e-62 243.0 230 53.9
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 9.0e-62 241.1 229 48.9
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.2e-61 240.7 199 55.3
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-61 240.7 225 50.7
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 1.5e-61 240.4 331 39.9
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 3.4e-61 239.2 187 56.7
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 7.6e-61 238.0 206 56.3
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 1.0e-60 237.7 222 48.6
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.0e-60 237.7 228 47.8
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 3.8e-60 235.7 228 47.4
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 1.4e-59 233.8 235 50.6
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 4.2e-59 232.3 221 48.4
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 5.5e-59 231.9 232 48.7
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 9.3e-59 231.1 218 49.1
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 3.5e-58 229.2 225 46.7
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 3.5e-58 229.2 225 46.2
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 4.6e-58 228.8 225 46.2
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 4.6e-58 228.8 225 46.2
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 6.0e-58 228.4 228 46.5
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 1.0e-57 227.6 225 46.2
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 1.0e-57 227.6 227 45.8
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 1.0e-57 227.6 225 46.2
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 1.0e-57 227.6 225 46.2
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 1.0e-57 227.6 228 45.6
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.0e-57 227.6 219 47.9
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 2.3e-57 226.5 227 45.8
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 2.3e-57 226.5 224 46.0
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 8.7e-57 224.6 229 46.3
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 1.1e-56 224.2 228 45.2
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 1.1e-56 224.2 228 47.4
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 1.1e-56 224.2 185 53.5
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.9e-56 223.4 221 46.6
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 1.9e-56 223.4 220 46.8
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 1.3e-55 220.7 185 54.1
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 1.3e-55 220.7 232 46.6
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.6e-55 220.3 224 46.4
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 1.6e-55 220.3 228 43.9
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.8e-55 218.8 228 43.9
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 6.9e-54 214.9 219 45.7
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 5.5e-51 205.3 219 44.3
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 6.1e-50 201.8 201 45.8
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.8e-47 193.0 228 41.2
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 6.3e-47 191.8 146 58.2
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 6.9e-46 188.3 227 42.3
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.5e-45 187.2 238 40.3
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 7.7e-45 184.9 225 45.3
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 3.8e-44 182.6 227 39.2
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 9.4e-43 177.9 218 41.7
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.6e-42 177.2 217 39.6
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 1.6e-42 177.2 168 51.2
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.7e-42 176.4 228 40.4
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 6.3e-39 165.2 154 49.4
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 1.0e-36 157.9 154 49.4
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.3e-36 157.5 200 41.0
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.4e-35 154.1 170 49.4
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 3.2e-35 152.9 152 43.4
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 2.7e-34 149.8 196 37.2
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 6.1e-34 148.7 128 52.3
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 1.9e-27 127.1 133 44.4
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.6e-26 122.9 107 52.3
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.4e-25 120.9 104 48.1
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 1.6e-21 107.5 96 49.0
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 2.5e-19 100.1 87 52.9
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 3.5e-13 79.7 53 64.2
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 5.7e-08 62.4 50 54.0


User provided reference genes

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