Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.3e-62 243.0 139 100.0
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 5.4e-48 194.5 141 76.6
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.5e-45 186.4 109 83.5
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.4e-43 179.9 137 73.0
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.3e-43 179.1 119 76.5
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.5e-42 176.4 119 73.9
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 7.0e-40 167.5 119 70.6
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 3.0e-38 162.2 136 69.9
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 3.9e-38 161.8 113 71.7
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 3.9e-38 161.8 110 71.8
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 5.0e-38 161.4 113 72.6
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 1.1e-37 160.2 118 72.0
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 1.1e-37 160.2 113 70.8
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.1e-37 160.2 120 70.0
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.5e-37 159.8 113 70.8
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.9e-37 159.5 120 71.7
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.9e-37 159.5 113 70.8
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.5e-37 159.1 113 72.6
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.5e-37 159.1 113 72.6
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 2.5e-37 159.1 106 73.6
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 3.3e-37 158.7 109 71.6
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 3.3e-37 158.7 116 69.8
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 4.3e-37 158.3 119 69.7
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 4.3e-37 158.3 120 70.0
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 4.3e-37 158.3 113 71.7
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 4.3e-37 158.3 113 71.7
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 4.3e-37 158.3 113 71.7
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 4.3e-37 158.3 120 66.7
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.3e-37 158.3 113 70.8
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 4.3e-37 158.3 113 70.8
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 4.3e-37 158.3 113 70.8
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 7.3e-37 157.5 113 69.0
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 7.3e-37 157.5 139 64.0
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 9.5e-37 157.1 106 72.6
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 1.2e-36 156.8 120 67.5
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.6e-36 156.4 120 67.5
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 1.6e-36 156.4 110 71.8
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 2.1e-36 156.0 113 71.7
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 3.6e-36 155.2 139 63.3
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 6.2e-36 154.5 116 69.8
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 6.2e-36 154.5 110 70.0
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 6.2e-36 154.5 120 67.5
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 8.1e-36 154.1 120 65.0
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.4e-35 153.3 115 66.1
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 1.4e-35 153.3 116 68.1
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 1.8e-35 152.9 117 70.1
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 2.3e-35 152.5 113 67.3
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 2.3e-35 152.5 110 69.1
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.3e-35 152.5 113 69.0
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 4.0e-35 151.8 120 63.3
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 4.0e-35 151.8 113 70.8
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.2e-35 151.4 113 66.4
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 5.2e-35 151.4 113 66.4
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 6.8e-35 151.0 135 62.2
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 6.8e-35 151.0 120 63.3
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 6.8e-35 151.0 113 65.5
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 8.9e-35 150.6 115 67.0
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 8.9e-35 150.6 120 63.3
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 8.9e-35 150.6 111 69.4
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 1.5e-34 149.8 113 66.4
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 2.0e-34 149.4 110 68.2
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 3.4e-34 148.7 105 66.7
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 4.4e-34 148.3 113 65.5
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 4.4e-34 148.3 108 65.7
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 4.4e-34 148.3 108 65.7
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 4.4e-34 148.3 120 61.7
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 4.4e-34 148.3 120 65.0
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 5.8e-34 147.9 108 64.8
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 5.8e-34 147.9 108 64.8
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 7.5e-34 147.5 135 61.5
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 7.5e-34 147.5 105 67.6
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 7.5e-34 147.5 115 64.3
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 7.5e-34 147.5 134 59.7
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 9.8e-34 147.1 115 64.3
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.3e-33 146.7 108 64.8
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 1.3e-33 146.7 134 59.0
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.3e-33 146.7 134 59.0
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 1.7e-33 146.4 108 64.8
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.7e-33 146.4 108 64.8
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 1.7e-33 146.4 105 65.7
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 1.7e-33 146.4 108 64.8
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 1.7e-33 146.4 134 59.0
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 2.2e-33 146.0 108 63.9
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 2.2e-33 146.0 134 59.0
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.2e-33 146.0 134 59.7
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 3.7e-33 145.2 115 65.2
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 4.9e-33 144.8 113 65.5
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 4.9e-33 144.8 108 63.9
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 6.4e-33 144.4 109 66.1
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 6.4e-33 144.4 105 63.8
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 6.4e-33 144.4 124 62.1
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 8.3e-33 144.1 108 62.0
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.1e-32 143.7 134 56.7
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 2.4e-32 142.5 134 56.7
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 2.4e-32 142.5 113 67.3
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 4.1e-32 141.7 117 65.8
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.4e-32 141.4 113 65.5
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 5.4e-32 141.4 109 63.3
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 7.1e-32 141.0 139 56.1
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 7.1e-32 141.0 115 60.9
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 1.2e-31 140.2 117 59.8
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 2.1e-31 139.4 117 59.8
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 2.1e-31 139.4 157 55.4
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 2.7e-31 139.0 127 61.4
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 2.7e-31 139.0 108 61.1
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 3.5e-31 138.7 92 76.1
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 1.0e-30 137.1 104 64.4
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.0e-30 137.1 99 65.7
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 3.0e-30 135.6 117 58.1
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.1e-29 133.7 97 64.9
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 1.5e-29 133.3 112 59.8
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.9e-29 132.9 139 51.8
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 3.3e-29 132.1 112 58.0
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 3.3e-29 132.1 87 77.0
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 5.6e-29 131.3 112 57.1
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 5.6e-29 131.3 112 57.1
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 5.6e-29 131.3 112 57.1
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 5.6e-29 131.3 112 57.1
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 9.5e-29 130.6 112 57.1
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 1.6e-28 129.8 110 57.3
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 1.6e-28 129.8 110 57.3
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.6e-28 129.8 92 69.6
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 2.1e-28 129.4 116 56.0
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 2.1e-28 129.4 112 57.1
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 2.1e-28 129.4 114 59.6
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 4.7e-28 128.3 87 70.1
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 8.1e-28 127.5 112 56.2
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 1.1e-27 127.1 134 50.7
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 1.4e-27 126.7 110 56.4
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.4e-27 126.7 175 44.0
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.8e-27 126.3 150 51.3
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 2.3e-27 125.9 134 50.0
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 1.3e-25 120.2 76 72.4
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 1.1e-24 117.1 104 61.5
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 1.1e-24 117.1 88 61.4
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 2.4e-24 115.9 127 55.1
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 9.2e-24 114.0 78 75.6
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 2.7e-23 112.5 161 41.6
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 3.0e-22 109.0 82 70.7
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 3.0e-22 109.0 79 65.8
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 8.6e-22 107.5 76 65.8
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 8.6e-22 107.5 101 56.4
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 1.5e-21 106.7 103 48.5
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 1.6e-20 103.2 100 50.0
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 3.1e-19 99.0 89 55.1
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 6.8e-19 97.8 63 69.8
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 8.9e-19 97.4 107 50.5
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 5.8e-18 94.7 105 49.5
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 5.8e-18 94.7 78 60.3
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 2.2e-17 92.8 78 52.6
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 3.8e-17 92.0 72 61.1
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 4.9e-17 91.7 69 60.9
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 2.3e-14 82.8 114 43.0
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 1.5e-13 80.1 61 70.5
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 6.2e-12 74.7 70 51.4
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 5.8e-10 68.2 98 36.7
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 5.4e-08 61.6 105 38.1
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 8.7e-06 54.3 52 48.1


User provided reference genes

Program Settings