Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0050 Marchantia polymorpha HOM05D003809 ORTHO05D003935 1.8e-182 642.5 342 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 1.1e-28 131.7 328 35.7
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 5.1e-23 112.8 112 43.8
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.9e-22 110.9 204 37.3
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 5.6e-22 109.4 219 36.5
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 7.3e-22 109.0 219 36.5
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 9.5e-22 108.6 217 36.4
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 1.2e-21 108.2 98 50.0
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 1.6e-21 107.8 129 44.2
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.8e-21 107.1 219 36.1
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 6.2e-21 105.9 129 41.1
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 8.1e-21 105.5 197 33.0
HPP92_019882 Vanilla planifolia HOM05D003809 ORTHO05D003935 8.1e-21 105.5 160 36.9
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 1.4e-20 104.8 121 43.8
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 1.8e-20 104.4 117 43.6
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 1.8e-20 104.4 124 41.1
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 1.8e-20 104.4 223 34.5
Aqoxy4G02610 Aquilegia oxysepala HOM05D003809 ORTHO05D003935 6.8e-20 102.4 116 41.4
Cfa017221 Carpinus fangiana HOM05D003809 ORTHO05D003935 6.8e-20 102.4 187 34.2
Cfa017222 Carpinus fangiana HOM05D003809 ORTHO05D003935 6.8e-20 102.4 187 34.2
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 1.2e-19 101.7 222 34.2
Lalb_Chr07g0193501 Lupinus albus HOM05D003809 ORTHO05D003935 1.2e-19 101.7 147 36.7
SEGI_39495 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 1.5e-19 101.3 222 29.3
Manes.09G104500 Manihot esculenta HOM05D003809 ORTHO05D003935 2.6e-19 100.5 121 41.3
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 3.4e-19 100.1 170 35.3
Nitab4.5_0000335g0110 Nicotiana tabacum HOM05D003809 ORTHO05D003935 3.4e-19 100.1 179 35.8
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 4.4e-19 99.8 170 34.7
SMO118G0122 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 4.4e-19 99.8 205 34.1
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 5.8e-19 99.4 165 35.8
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 5.8e-19 99.4 167 35.9
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 7.6e-19 99.0 167 32.9
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 9.9e-19 98.6 179 33.5
Manes.08G091100 Manihot esculenta HOM05D003809 ORTHO05D003935 9.9e-19 98.6 157 37.6
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 1.3e-18 98.2 110 42.7
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 1.3e-18 98.2 212 31.1
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 1.7e-18 97.8 98 44.9
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 1.7e-18 97.8 189 37.6
Glyma.07G148000 Glycine max HOM05D003809 ORTHO05D003935 1.7e-18 97.8 98 45.9
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 1.7e-18 97.8 191 37.2
Sed0014073 Sechium edule HOM05D003809 ORTHO05D003935 1.7e-18 97.8 180 36.7
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 2.2e-18 97.4 126 41.3
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 2.2e-18 97.4 224 32.1
Sopen09g007230 Solanum pennellii HOM05D003809 ORTHO05D003935 2.9e-18 97.1 228 34.2
DCAR_015432 Daucus carota HOM05D003809 ORTHO05D003935 3.8e-18 96.7 175 30.9
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 3.8e-18 96.7 188 35.6
Potri.016G114500 Populus trichocarpa HOM05D003809 ORTHO05D003935 3.8e-18 96.7 237 30.4
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 3.8e-18 96.7 169 34.3
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 4.9e-18 96.3 118 42.4
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 4.9e-18 96.3 118 42.4
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 4.9e-18 96.3 183 33.3
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 6.4e-18 95.9 133 39.1
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 6.4e-18 95.9 269 29.7
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 8.4e-18 95.5 237 31.2
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 8.4e-18 95.5 174 33.9
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 8.4e-18 95.5 154 36.4
Os01g0856900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 8.4e-18 95.5 130 36.9
Sed0009856 Sechium edule HOM05D003809 ORTHO05D003935 1.1e-17 95.1 124 38.7
CDE04G0185 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 1.4e-17 94.7 171 32.7
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.9e-17 94.4 98 41.8
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 2.4e-17 94.0 195 31.3
Manes.01G162300 Manihot esculenta HOM05D003809 ORTHO05D003935 2.4e-17 94.0 172 33.7
Potri.006G099200 Populus trichocarpa HOM05D003809 ORTHO05D003935 2.4e-17 94.0 233 30.9
Dinv28631 Davidia involucrata HOM05D003809 ORTHO05D003935 3.2e-17 93.6 98 39.8
Migut.L02004 Erythranthe guttata HOM05D003809 ORTHO05D003935 3.2e-17 93.6 118 41.5
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 3.2e-17 93.6 124 37.9
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 3.2e-17 93.6 124 37.9
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 3.2e-17 93.6 175 36.6
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 3.2e-17 93.6 133 34.6
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 4.2e-17 93.2 298 29.9
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 4.2e-17 93.2 133 34.6
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 4.2e-17 93.2 197 35.5
FAN05G1413 Fragaria x ananassa HOM05D003809 ORTHO05D003935 5.4e-17 92.8 223 34.5
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 5.4e-17 92.8 143 35.0
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 5.4e-17 92.8 174 35.1
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 7.1e-17 92.4 198 33.3
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 7.1e-17 92.4 143 35.0
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 7.1e-17 92.4 143 35.0
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 7.1e-17 92.4 202 33.2
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 7.1e-17 92.4 237 29.1
SMO142G0031 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 7.1e-17 92.4 123 38.2
CANSAT35G1529 Cannabis sativa HOM05D003809 ORTHO05D003935 9.2e-17 92.0 201 30.3
Dinv14451 Davidia involucrata HOM05D003809 ORTHO05D003935 9.2e-17 92.0 199 31.7
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 9.2e-17 92.0 189 34.9
Solyc09g014400.3 Solanum lycopersicum HOM05D003809 ORTHO05D003935 9.2e-17 92.0 247 31.6
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 9.2e-17 92.0 199 34.2
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 1.2e-16 91.7 198 33.8
Gorai.006G181700 Gossypium raimondii HOM05D003809 ORTHO05D003935 1.2e-16 91.7 189 34.9
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 1.2e-16 91.7 217 30.0
Manes.02G120500 Manihot esculenta HOM05D003809 ORTHO05D003935 1.2e-16 91.7 174 34.5
Potri.009G044800 Populus trichocarpa HOM05D003809 ORTHO05D003935 1.2e-16 91.7 169 33.7
GSVIVG01033976001 Vitis vinifera HOM05D003809 ORTHO05D003935 1.2e-16 91.7 216 32.4
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 1.6e-16 91.3 238 31.5
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 2.1e-16 90.9 98 42.9
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 2.7e-16 90.5 175 33.7
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 3.5e-16 90.1 171 31.6
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 3.5e-16 90.1 234 31.6
Pp3c6_22980 Physcomitrium patens HOM05D003809 ORTHO05D003935 3.5e-16 90.1 256 30.1
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 3.5e-16 90.1 225 31.1
Glyma.18G199300 Glycine max HOM05D003809 ORTHO05D003935 4.6e-16 89.7 153 35.3
HanXRQChr01g0007011 Helianthus annuus HOM05D003809 ORTHO05D003935 4.6e-16 89.7 115 36.5
SMO358G0668 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 4.6e-16 89.7 138 36.2
CAN.G772.1 Capsicum annuum HOM05D003809 ORTHO05D003935 6.0e-16 89.4 181 34.3
Glyma.03G061751 Glycine max HOM05D003809 ORTHO05D003935 6.0e-16 89.4 99 40.4
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 6.0e-16 89.4 143 34.3
Gohir.A11G329600 Gossypium hirsutum HOM05D003809 ORTHO05D003935 6.0e-16 89.4 235 31.5
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 6.0e-16 89.4 151 35.8
Thecc.05G018100 Theobroma cacao HOM05D003809 ORTHO05D003935 6.0e-16 89.4 275 28.7
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 7.8e-16 89.0 246 32.1
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 1.0e-15 88.6 238 30.7
PGR004G1101 Punica granatum HOM05D003809 ORTHO05D003935 1.3e-15 88.2 181 30.9
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 1.7e-15 87.8 212 30.2
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 1.7e-15 87.8 187 28.3
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 2.3e-15 87.4 207 30.9
Sabra06G0076000 Salix brachista HOM05D003809 ORTHO05D003935 2.3e-15 87.4 189 32.8
AUR62001660 Chenopodium quinoa HOM05D000001 ORTHO05D000003 3.0e-15 87.0 158 34.2
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 3.0e-15 87.0 189 29.1
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 3.0e-15 87.0 184 34.2
SEGI_38034 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 3.0e-15 87.0 201 31.8
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 3.9e-15 86.7 219 32.4
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 5.1e-15 86.3 184 29.3
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 6.6e-15 85.9 239 31.4
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 6.6e-15 85.9 127 33.1
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 6.6e-15 85.9 193 27.5
PSO566G0289 Papaver somniferum HOM05D003809 ORTHO05D003935 8.7e-15 85.5 173 30.6
PSO566G0296 Papaver somniferum HOM05D003809 ORTHO05D003935 8.7e-15 85.5 93 43.0
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 1.1e-14 85.1 193 31.1
Lsat_1_v5_gn_5_155280 Lactuca sativa HOM05D003809 ORTHO05D003935 1.1e-14 85.1 171 31.6
PSO566G0209 Papaver somniferum HOM05D003809 ORTHO05D003935 1.1e-14 85.1 93 41.9
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 1.5e-14 84.7 107 37.4
DCAR_018710 Daucus carota HOM05D003809 ORTHO05D003935 1.5e-14 84.7 208 28.8
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 1.5e-14 84.7 231 29.9
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 1.9e-14 84.3 223 31.8
ECA246G4062 Erigeron canadensis HOM05D000041 ORTHO05D000452 2.5e-14 84.0 122 34.4
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 3.3e-14 83.6 195 29.2
Lj3A954G70 Lonicera japonica HOM05D003809 ORTHO05D003935 3.3e-14 83.6 226 28.3
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 4.3e-14 83.2 194 29.9
ECA248G2658 Erigeron canadensis HOM05D003809 ORTHO05D003935 4.3e-14 83.2 181 31.5
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 4.3e-14 83.2 209 31.6
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 4.3e-14 83.2 192 31.2
COL.COLO4_19141 Corchorus olitorius HOM05D000001 ORTHO05D000003 9.6e-14 82.0 162 32.7
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 1.2e-13 81.6 212 29.7
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 1.2e-13 81.6 173 34.7
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.6e-13 81.3 153 28.8
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-13 81.3 153 28.8
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.1e-13 80.9 153 28.8
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.8e-13 80.5 153 28.8
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 6.2e-13 79.3 219 30.6
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 8.1e-13 79.0 136 30.1
Os05g0446900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 1.8e-12 77.8 222 31.1
Cre06.g269650 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 2.4e-12 77.4 96 36.5
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 2.4e-12 77.4 155 30.3
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 6.9e-12 75.9 199 27.1
PSO566G0059 Papaver somniferum HOM05D003809 ORTHO05D003935 6.9e-12 75.9 79 39.2
PGR004G0704 Punica granatum HOM05D003809 ORTHO05D003935 6.9e-12 75.9 158 31.0
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 2.0e-11 74.3 193 30.1
CARHR211600 Cardamine hirsuta HOM05D003809 ORTHO05D003935 2.6e-11 73.9 197 26.9
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 3.4e-11 73.6 210 28.6
Zm00001eb289050 Zea mays HOM05D003809 ORTHO05D003935 4.4e-11 73.2 190 28.9
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 5.8e-11 72.8 238 28.2
Thhalv10013736m.g Eutrema salsugineum HOM05D003809 ORTHO05D003935 7.6e-11 72.4 193 26.9
Haze_20987 Corylus avellana HOM05D003809 ORTHO05D003935 3.8e-10 70.1 117 34.2
Cre09.g415600 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.1e-09 68.6 122 29.5
BcaNung06532 Brassica carinata HOM05D003809 ORTHO05D003935 1.4e-09 68.2 274 25.9
Cre09.g407501 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 3.2e-09 67.0 87 36.8
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 4.2e-09 66.6 97 30.9
Cre17.g703000 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 5.4e-09 66.2 63 47.6
Nn2g11448 Nelumbo nucifera HOM05D003809 ORTHO05D003935 2.7e-08 63.9 70 40.0
Cre12.g551200 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 7.8e-08 62.4 103 34.0
Rhsim04G0129000 Rhododendron simsii HOM05D003809 ORTHO05D003935 1.3e-07 61.6 42 54.8
MCO16G355 Micromonas commoda HOM05D001235 ORTHO05D005684 1.7e-07 61.2 62 41.9
CSS0006268 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 3.0e-07 60.5 124 30.6
Cre06.g269601 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 3.0e-07 60.5 72 36.1
Cre03.g158050 Chlamydomonas reinhardtii HOM05D000808 ORTHO05D003935 5.1e-07 59.7 157 26.1
Sc06g0006330 Simmondsia chinensis HOM05D003809 ORTHO05D003935 8.7e-07 58.9 40 57.5
MCO16G173 Micromonas commoda HOM05D003809 ORTHO05D003935 1.5e-06 58.2 123 26.0
CAN.G681.26 Capsicum annuum HOM05D001235 ORTHO05D005684 3.3e-06 57.0 130 29.2
Cre02.g091750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 9.6e-06 55.5 106 27.4


User provided reference genes

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