Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 0.0e+00 1913.7 1066 100.0
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 4.0e-284 981.9 809 63.3
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 9.6e-254 880.9 859 55.8
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 1.9e-230 803.5 812 52.8
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 8.2e-229 798.1 828 51.2
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 3.8e-226 789.3 827 51.5
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 8.4e-226 788.1 821 52.4
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 2.1e-224 783.5 822 51.6
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.7e-224 783.1 811 51.9
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 3.5e-224 782.7 846 50.1
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 1.0e-223 781.2 815 52.6
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 2.3e-223 780.0 821 50.9
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 2.3e-223 780.0 816 52.0
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 5.1e-223 778.9 813 51.9
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 5.1e-223 778.9 822 51.8
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 6.7e-223 778.5 836 50.5
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 8.7e-223 778.1 822 51.8
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 1.5e-222 777.3 812 52.5
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 1.5e-222 777.3 827 50.9
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 7.4e-222 775.0 824 50.8
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 9.7e-222 774.6 826 51.7
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 1.3e-221 774.2 816 50.1
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 2.8e-221 773.1 825 49.9
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 3.7e-221 772.7 843 49.1
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 4.8e-221 772.3 843 50.1
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 4.8e-221 772.3 843 50.1
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 4.8e-221 772.3 828 47.9
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 1.8e-220 770.4 824 49.6
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 3.1e-220 769.6 818 50.7
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 4.1e-220 769.2 829 48.6
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 4.1e-220 769.2 823 50.8
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 4.1e-220 769.2 815 49.7
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 5.3e-220 768.8 813 51.7
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 6.9e-220 768.5 813 50.6
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 1.5e-219 767.3 824 49.4
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 4.5e-219 765.8 829 49.3
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 1.0e-218 764.6 826 49.6
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 1.3e-218 764.2 829 49.5
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 1.3e-218 764.2 841 48.6
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 1.7e-218 763.8 824 50.8
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 1.7e-218 763.8 841 49.1
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 3.8e-218 762.7 828 49.4
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 6.5e-218 761.9 818 51.0
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 1.1e-217 761.1 802 50.0
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 1.1e-217 761.1 821 49.2
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 1.4e-217 760.8 829 48.9
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 4.2e-217 759.2 844 48.7
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 5.5e-217 758.8 828 49.2
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 7.2e-217 758.4 829 49.0
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 9.3e-217 758.1 830 49.2
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 1.6e-216 757.3 820 50.9
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 1.6e-216 757.3 829 50.1
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 2.7e-216 756.5 814 51.0
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 2.7e-216 756.5 832 49.6
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 1.0e-215 754.6 835 49.0
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 1.0e-215 754.6 805 51.6
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 3.9e-215 752.7 824 49.6
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 5.1e-215 752.3 811 50.8
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 5.1e-215 752.3 815 50.4
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 6.7e-215 751.9 847 49.7
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 8.7e-215 751.5 817 50.8
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 1.1e-214 751.1 820 50.0
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 4.3e-214 749.2 852 48.0
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 5.7e-214 748.8 841 48.5
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 5.7e-214 748.8 825 50.2
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 9.7e-214 748.0 854 47.9
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.6e-213 747.3 837 48.7
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 2.2e-213 746.9 801 48.6
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 2.8e-213 746.5 823 49.3
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 4.8e-213 745.7 832 49.2
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 8.2e-213 745.0 838 48.7
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 1.8e-212 743.8 821 49.3
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 3.1e-212 743.0 810 50.0
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 4.5e-211 739.2 828 50.2
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 7.7e-211 738.4 836 47.5
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 1.7e-210 737.3 826 48.5
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 2.2e-210 736.9 810 48.0
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 1.1e-209 734.6 795 49.7
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 2.7e-208 729.9 816 49.9
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 8.2e-205 718.4 814 49.4
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 9.1e-204 714.9 813 48.3
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 2.9e-202 709.9 808 47.2
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 8.5e-202 708.4 835 46.8
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 1.2e-200 704.5 839 47.8
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 1.8e-196 690.6 831 47.5
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 1.9e-193 680.6 825 47.6
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 1.7e-189 667.5 748 48.8
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 1.7e-189 667.5 748 48.8
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 6.8e-183 645.6 824 45.4
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 6.5e-178 629.0 797 47.1
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 4.0e-167 593.2 818 40.8
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 3.2e-156 557.0 616 49.2
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 9.5e-145 518.8 472 55.1
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 1.3e-141 508.4 498 52.4
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 1.3e-138 498.4 624 47.8
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.8e-136 490.7 556 49.8
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.2e-117 427.9 523 48.4
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.5e-105 388.7 506 46.4
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.5e-100 371.3 474 47.7
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 3.4e-94 350.9 560 41.6
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.0e-82 312.8 459 44.0
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 8.8e-82 309.7 411 47.0
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 5.7e-73 280.4 346 48.8
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.0e-62 245.4 241 51.0
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.9e-60 238.8 232 51.7
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 7.5e-57 226.9 223 51.6
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 2.7e-54 218.4 198 58.6
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.3e-52 211.5 191 56.5
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 5.6e-52 210.7 189 55.6
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.3e-52 210.3 191 54.5
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 4.0e-50 204.5 189 53.4
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 1.2e-49 203.0 189 54.0
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 4.1e-39 167.9 288 38.9
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 2.5e-36 158.7 176 43.2
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 3.1e-34 151.8 113 62.8
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.3e-32 146.4 119 61.3
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 3.7e-32 144.8 128 57.0
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 9.9e-25 120.2 79 68.4
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.7e-24 119.4 143 38.5
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 3.8e-24 118.2 115 47.8
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.1e-20 106.7 164 34.8
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 5.3e-18 97.8 91 48.4
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 1.5e-17 96.3 87 49.4
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 5.8e-17 94.4 94 55.3
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.3e-13 82.4 84 53.6
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.3e-12 78.2 53 69.8
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 6.2e-11 74.3 49 73.5
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 1.1e-07 63.5 57 49.1
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.4e-07 63.2 92 38.0
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.4e-07 63.2 92 38.0
PRCOL_00002211 Prasinoderma coloniale HOM05D001779 ORTHO05D050587 1.9e-07 62.8 228 25.9
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 3.5e-06 58.5 200 26.0
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 4.6e-06 58.2 206 28.6
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.6e-06 58.2 61 49.2
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 7.9e-06 57.4 162 24.1


User provided reference genes

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