Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 7.4e-101 370.5 187 100.0
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.2e-57 226.1 156 67.3
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 4.2e-56 221.9 176 64.2
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 1.2e-55 220.3 177 63.8
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 3.6e-55 218.8 159 66.0
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 6.1e-55 218.0 154 70.1
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 3.0e-54 215.7 151 68.2
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 3.0e-54 215.7 151 68.2
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 5.2e-54 214.9 187 59.9
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 8.8e-54 214.2 160 63.1
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 8.8e-54 214.2 153 66.0
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 1.2e-53 213.8 156 68.6
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.5e-53 213.4 158 65.8
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 1.5e-53 213.4 153 65.4
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 1.5e-53 213.4 152 66.4
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 1.5e-53 213.4 150 71.3
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 2.0e-53 213.0 153 65.4
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 2.6e-53 212.6 152 66.4
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 2.6e-53 212.6 152 66.4
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 2.6e-53 212.6 153 66.0
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 2.6e-53 212.6 151 66.9
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 3.4e-53 212.2 151 67.5
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 4.4e-53 211.8 151 66.9
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 5.7e-53 211.5 151 67.5
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 5.7e-53 211.5 151 67.5
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 5.7e-53 211.5 152 65.1
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 5.7e-53 211.5 150 68.0
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 5.7e-53 211.5 151 66.9
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 5.7e-53 211.5 148 69.6
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 7.5e-53 211.1 151 66.9
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 7.5e-53 211.1 151 66.2
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 7.5e-53 211.1 151 66.9
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 9.8e-53 210.7 155 63.9
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 9.8e-53 210.7 151 66.2
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 9.8e-53 210.7 151 67.5
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 1.3e-52 210.3 153 64.1
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 1.3e-52 210.3 143 68.5
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.3e-52 210.3 151 67.5
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.3e-52 210.3 153 65.4
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 1.3e-52 210.3 154 64.9
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 1.7e-52 209.9 153 65.4
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 2.2e-52 209.5 152 64.5
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 2.8e-52 209.1 151 68.2
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 2.8e-52 209.1 177 59.3
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 3.7e-52 208.8 151 66.9
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 4.8e-52 208.4 182 57.1
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 6.3e-52 208.0 151 66.9
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 6.3e-52 208.0 155 65.8
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 6.3e-52 208.0 151 66.2
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.1e-51 207.2 155 65.8
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 1.4e-51 206.8 151 65.6
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.4e-51 206.8 180 57.2
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 1.8e-51 206.5 151 65.6
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 1.8e-51 206.5 151 66.9
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 2.4e-51 206.1 151 65.6
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 3.1e-51 205.7 152 66.4
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 4.1e-51 205.3 162 61.1
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 4.1e-51 205.3 150 65.3
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 4.1e-51 205.3 180 56.7
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 4.1e-51 205.3 153 63.4
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 5.4e-51 204.9 151 64.9
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 5.4e-51 204.9 152 65.1
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 5.4e-51 204.9 154 63.0
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 5.4e-51 204.9 151 64.9
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 5.4e-51 204.9 151 66.9
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 5.4e-51 204.9 151 65.6
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.0e-51 204.5 151 64.2
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 7.0e-51 204.5 151 64.2
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 9.1e-51 204.1 156 66.0
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 9.1e-51 204.1 151 64.9
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 9.1e-51 204.1 150 66.7
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 1.2e-50 203.8 150 66.7
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 2.0e-50 203.0 150 62.7
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 2.7e-50 202.6 151 65.6
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 3.5e-50 202.2 151 63.6
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.5e-50 202.2 151 63.6
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.5e-50 202.2 151 63.6
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.5e-50 202.2 151 63.6
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 4.5e-50 201.8 143 68.5
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 5.9e-50 201.4 150 65.3
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 7.7e-50 201.1 151 61.6
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 7.7e-50 201.1 151 61.6
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 7.7e-50 201.1 151 61.6
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 1.0e-49 200.7 165 59.4
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 1.0e-49 200.7 154 63.6
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 2.2e-49 199.5 143 65.0
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 5.0e-49 198.4 176 58.0
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 6.5e-49 198.0 143 64.3
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 6.5e-49 198.0 155 63.2
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 8.5e-49 197.6 151 62.9
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 1.1e-48 197.2 151 62.3
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 1.1e-48 197.2 183 56.8
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 3.2e-48 195.7 144 67.4
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 5.5e-48 194.9 151 60.9
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.2e-48 194.5 151 62.9
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 7.2e-48 194.5 174 55.2
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 1.2e-47 193.7 166 56.0
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 1.2e-47 193.7 193 52.8
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 1.6e-47 193.4 174 56.3
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 2.7e-47 192.6 151 62.9
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 8.0e-47 191.0 184 55.4
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 1.2e-45 187.2 156 59.6
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 2.6e-45 186.0 169 55.6
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 2.6e-45 186.0 190 51.1
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 2.6e-45 186.0 174 55.7
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 4.4e-45 185.3 200 50.0
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 2.0e-42 176.4 196 49.0
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 3.8e-41 172.2 165 53.9
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 6.4e-36 154.8 124 60.5
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 5.4e-35 151.8 117 64.1
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 4.3e-32 142.1 143 49.0
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 2.8e-31 139.4 137 51.1
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 2.8e-31 139.4 122 59.0
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 6.2e-31 138.3 81 72.8
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 2.3e-30 136.3 150 48.7
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.7e-26 122.9 128 49.2
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.7e-26 122.9 128 49.2
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 3.7e-20 102.4 135 40.0
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 6.4e-20 101.7 114 44.7
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 2.4e-19 99.8 114 40.4
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 3.2e-19 99.4 60 70.0
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 3.0e-17 92.8 79 59.5
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 2.8e-15 86.3 106 52.8
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 1.8e-14 83.6 71 63.4
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 1.9e-08 63.5 35 77.1
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 3.6e-07 59.3 173 28.3
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 8.1e-07 58.2 136 29.4
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 1.4e-06 57.4 97 34.0
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 2.4e-06 56.6 132 28.8
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 2.4e-06 56.6 96 36.5
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 2.4e-06 56.6 132 28.0
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 4.0e-06 55.8 138 27.5
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 5.2e-06 55.5 105 30.5
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 5.2e-06 55.5 95 34.7
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 6.8e-06 55.1 132 28.8
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 8.9e-06 54.7 105 30.5


User provided reference genes

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