Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 4.7e-260 901.4 728 100.0
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 4.9e-92 343.2 733 63.6
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 1.5e-85 321.6 461 79.2
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 5.8e-85 319.7 453 79.9
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 2.9e-84 317.4 461 78.7
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 3.8e-84 317.0 457 65.6
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 3.8e-84 317.0 461 78.7
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 4.9e-84 316.6 464 78.2
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 6.4e-84 316.2 429 83.0
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 1.1e-83 315.5 464 50.2
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 2.4e-83 314.3 461 77.9
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 4.2e-83 313.5 519 63.0
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 4.2e-83 313.5 688 61.5
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 9.3e-83 312.4 719 61.3
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 1.2e-82 312.0 461 78.7
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.6e-82 311.6 462 78.8
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 1.6e-82 311.6 429 82.8
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 2.1e-82 311.2 461 78.5
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 2.7e-82 310.8 461 77.9
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 3.5e-82 310.5 429 82.5
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 3.5e-82 310.5 466 77.0
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.5e-82 310.5 461 78.5
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 4.6e-82 310.1 428 82.5
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 4.6e-82 310.1 456 78.7
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 4.6e-82 310.1 461 65.7
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 7.8e-82 309.3 429 82.8
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 7.8e-82 309.3 462 78.6
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 1.0e-81 308.9 459 78.0
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 1.0e-81 308.9 436 82.1
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 1.7e-81 308.1 461 78.3
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 3.0e-81 307.4 461 77.9
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 1.1e-80 305.4 429 81.6
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-80 305.1 464 59.7
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.9e-80 304.7 461 77.4
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 3.3e-80 303.9 462 78.1
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 4.3e-80 303.5 461 77.7
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 4.3e-80 303.5 433 81.1
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 4.3e-80 303.5 461 77.4
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 5.6e-80 303.1 461 77.9
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 7.3e-80 302.8 456 77.4
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 9.6e-80 302.4 429 81.1
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.3e-79 302.0 692 59.2
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.3e-79 302.0 461 77.2
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 1.6e-79 301.6 661 63.1
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 3.6e-79 300.4 687 60.0
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 3.6e-79 300.4 460 77.6
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 8.1e-79 299.3 466 78.1
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 8.1e-79 299.3 447 79.0
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 8.1e-79 299.3 461 77.2
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 1.1e-78 298.9 496 73.4
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 2.4e-78 297.7 427 81.3
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 3.1e-78 297.4 513 72.5
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 6.9e-78 296.2 459 64.1
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 6.9e-78 296.2 462 76.8
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 1.2e-77 295.4 697 59.7
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.2e-77 295.4 458 77.1
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.5e-77 295.0 458 77.1
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.5e-77 295.0 489 73.4
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 2.0e-77 294.7 463 76.0
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 2.6e-77 294.3 684 60.4
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 3.4e-77 293.9 702 60.5
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 3.4e-77 293.9 709 60.2
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.5e-77 293.5 429 82.3
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 1.7e-76 291.6 493 50.7
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 2.9e-76 290.8 461 77.2
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 4.9e-76 290.0 447 77.9
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 8.4e-76 289.3 428 81.5
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.9e-75 288.1 694 59.4
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 2.4e-75 287.7 427 80.3
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 7.1e-75 286.2 478 73.4
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 1.2e-74 285.4 428 80.1
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 1.6e-74 285.0 511 70.8
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 2.1e-74 284.6 697 58.2
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 2.7e-74 284.3 466 75.8
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.0e-73 282.3 427 80.1
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.0e-73 282.3 525 69.3
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.3e-73 281.2 694 59.1
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 2.3e-73 281.2 601 62.6
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 1.9e-72 278.1 461 75.9
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.9e-72 278.1 431 75.6
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 2.5e-72 277.7 466 75.5
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 2.5e-72 277.7 465 75.5
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 4.8e-71 273.5 474 70.9
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 1.1e-70 272.3 453 76.2
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 5.3e-70 270.0 449 76.2
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 6.9e-70 269.6 474 60.5
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 5.8e-69 266.5 448 76.3
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 9.3e-67 259.2 697 48.1
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 9.3e-67 259.2 489 71.6
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 2.1e-66 258.1 428 78.0
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 2.1e-66 258.1 489 71.4
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 2.3e-65 254.6 450 48.4
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 3.0e-65 254.2 668 59.1
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 4.3e-64 250.4 352 73.3
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.3e-63 248.8 734 50.3
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.6e-63 248.4 511 68.9
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 3.7e-63 247.3 511 68.7
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 3.7e-63 247.3 511 68.9
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 1.4e-62 245.4 428 77.6
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 1.4e-62 245.4 461 73.8
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 1.8e-62 245.0 461 73.8
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.8e-62 245.0 734 47.3
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.4e-62 244.6 462 36.6
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 4.0e-62 243.8 838 35.9
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 2.0e-61 241.5 439 74.5
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 2.6e-61 241.1 792 44.3
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.5e-56 225.3 437 75.3
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.9e-52 211.1 369 81.3
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 1.1e-51 209.1 837 36.2
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.4e-51 208.8 141 73.0
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 2.1e-50 204.9 154 66.9
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 2.7e-50 204.5 522 64.9
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 3.6e-50 204.1 479 40.5
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.6e-50 203.8 369 79.4
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-47 195.3 356 75.0
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 1.4e-46 192.2 150 66.0
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 2.0e-45 188.3 414 71.0
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 1.0e-44 186.0 409 38.9
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 5.5e-43 180.3 365 49.0
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 7.2e-43 179.9 403 55.8
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 2.1e-42 178.3 166 56.6
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 3.0e-41 174.5 539 61.0
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 2.0e-37 161.8 396 34.6
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 2.1e-34 151.8 115 64.3
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 2.0e-32 145.2 166 50.0
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 2.0e-32 145.2 134 56.0
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 1.8e-30 138.7 296 34.8
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.1e-30 137.9 134 56.0
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 7.0e-30 136.7 84 77.4
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 3.5e-29 134.4 78 80.8
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 2.2e-28 131.7 79 78.5
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 5.0e-28 130.6 93 63.4
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.9e-27 128.6 393 57.8
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 2.5e-27 128.3 370 73.5
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.2e-27 127.5 74 75.7
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 2.1e-26 125.2 371 73.3
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 4.0e-25 120.9 458 40.6
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.2e-24 119.4 144 50.0
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 3.3e-24 117.9 75 69.3
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-24 116.7 75 68.0
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-23 115.5 75 66.7
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 3.7e-23 114.4 365 32.3
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.8e-23 114.0 75 65.3
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 2.4e-22 111.7 75 64.0
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 2.4e-22 111.7 75 64.0
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-22 111.7 388 29.1
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 3.1e-22 111.3 111 54.1
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 7.7e-21 106.7 53 84.9
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.7e-20 105.5 296 37.5
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 2.9e-20 104.8 142 46.5
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 5.5e-19 100.5 149 45.0
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.4e-17 95.9 62 71.0
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 1.8e-14 85.5 56 73.2
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 9.1e-14 83.2 102 50.0
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.2e-13 82.8 124 47.6
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 5.0e-12 77.4 92 48.9
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-12 76.6 54 64.8
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-12 76.6 54 64.8
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-12 76.6 54 64.8
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-12 76.6 54 64.8
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-12 76.6 54 64.8
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-12 76.6 54 64.8
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-12 76.6 54 64.8
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.9e-11 75.5 54 63.0
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 7.2e-11 73.6 45 80.0
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 7.2e-11 73.6 45 80.0
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.2e-11 73.6 77 59.7
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-10 72.8 76 59.2
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 4.7e-10 70.9 52 65.4
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 4.9e-07 60.8 148 29.7
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 1.8e-06 58.9 39 69.2
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 5.4e-06 57.4 72 36.1


User provided reference genes

Program Settings