Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 2.6e-308 1061.2 533 100.0
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 9.1e-104 381.7 550 44.7
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 1.0e-91 341.7 515 40.2
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 5.5e-85 319.3 516 40.7
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 2.1e-84 317.4 516 38.8
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 2.1e-84 317.4 510 40.0
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 8.0e-84 315.5 522 39.5
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 3.0e-83 313.5 513 38.8
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 5.2e-83 312.8 525 39.4
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 8.9e-83 312.0 527 40.0
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 2.0e-82 310.8 518 38.0
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.3e-81 308.1 515 38.8
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 4.9e-81 306.2 517 38.7
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 4.9e-81 306.2 518 37.8
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 8.3e-81 305.4 540 37.2
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.8e-80 304.3 521 37.8
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.8e-80 304.3 515 37.7
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 2.0e-79 300.8 530 37.2
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 5.9e-79 299.3 455 41.1
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.3e-78 298.1 485 40.6
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 1.7e-78 297.7 512 37.9
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.7e-78 297.7 515 37.5
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.3e-78 297.4 519 36.0
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 2.3e-78 297.4 509 39.3
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 2.3e-78 297.4 519 37.6
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 2.9e-78 297.0 534 36.1
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 2.9e-78 297.0 530 37.4
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 2.9e-78 297.0 515 37.9
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 6.6e-78 295.8 516 37.4
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 1.1e-77 295.0 503 39.4
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 1.5e-77 294.7 513 36.8
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.9e-77 294.3 512 38.5
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 2.5e-77 293.9 521 36.3
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.3e-77 293.5 534 36.1
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 4.3e-77 293.1 481 39.9
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 4.3e-77 293.1 518 37.8
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.6e-77 292.7 523 37.7
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 7.3e-77 292.4 517 37.7
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 9.5e-77 292.0 512 37.5
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.2e-76 291.6 519 37.8
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.1e-76 290.8 519 35.1
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 2.8e-76 290.4 460 39.3
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 3.6e-76 290.0 521 37.2
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 4.7e-76 289.7 513 36.8
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 8.0e-76 288.9 512 35.7
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 8.0e-76 288.9 519 35.3
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 1.0e-75 288.5 515 36.7
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.4e-75 288.1 523 35.6
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.4e-75 288.1 506 37.4
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 1.8e-75 287.7 520 36.7
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.8e-75 287.7 515 36.9
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 1.8e-75 287.7 519 36.8
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 1.8e-75 287.7 514 37.0
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 3.1e-75 287.0 512 38.7
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 6.8e-75 285.8 481 39.1
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.8e-75 285.8 509 37.7
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 6.8e-75 285.8 525 39.0
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 8.9e-75 285.4 515 37.1
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 3.4e-74 283.5 517 36.4
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 3.4e-74 283.5 546 36.4
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 4.4e-74 283.1 517 36.0
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 4.4e-74 283.1 519 36.8
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 1.7e-73 281.2 510 38.0
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 2.2e-73 280.8 520 35.6
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 2.9e-73 280.4 520 36.2
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 2.9e-73 280.4 519 36.4
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 8.3e-73 278.9 546 35.7
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 3.2e-72 276.9 450 38.2
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 7.0e-72 275.8 513 37.4
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 7.0e-72 275.8 513 37.4
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 7.8e-71 272.3 453 39.3
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.0e-70 271.9 517 34.8
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.3e-70 271.6 534 35.6
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 1.3e-70 271.6 514 35.8
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 1.7e-70 271.2 452 39.6
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 2.3e-70 270.8 523 34.2
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.5e-69 268.1 466 38.2
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 1.2e-68 265.0 511 36.6
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 1.6e-68 264.6 483 37.1
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.1e-67 261.9 516 37.0
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 8.9e-67 258.8 453 37.5
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.2e-66 258.5 524 35.9
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 5.8e-66 256.1 453 38.9
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 5.8e-66 256.1 479 35.7
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.4e-64 251.5 458 36.5
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 9.2e-64 248.8 471 35.2
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.1e-63 247.7 472 36.2
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 2.3e-62 244.2 480 34.4
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 5.2e-59 233.0 423 36.6
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 5.8e-58 229.6 838 27.3
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 6.4e-57 226.1 527 30.4
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.1e-56 225.3 517 32.9
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.4e-56 224.9 458 32.5
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 1.2e-55 221.9 521 32.1
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.3e-54 217.6 487 33.1
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 3.9e-54 216.9 411 35.3
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 2.1e-52 211.1 533 32.5
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 4.4e-50 203.4 529 31.2
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 2.9e-49 200.7 256 44.1
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 7.8e-47 192.6 243 46.1
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 1.7e-46 191.4 461 32.3
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 3.0e-46 190.7 247 44.9
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 8.7e-46 189.1 370 35.1
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 2.5e-45 187.6 244 43.4
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 6.2e-44 183.0 243 43.2
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 2.4e-43 181.0 447 32.7
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.4e-40 171.8 394 34.0
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 5.4e-40 169.9 495 29.9
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 7.1e-40 169.5 188 48.4
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.1e-39 167.9 212 46.7
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 7.9e-39 166.0 411 30.9
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 3.9e-38 163.7 301 35.9
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.7e-38 162.5 189 47.1
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 1.3e-36 158.7 257 38.9
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 9.0e-35 152.5 190 46.8
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 5.8e-34 149.8 573 28.1
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 9.3e-32 142.5 165 47.3
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 1.3e-30 138.7 243 37.9
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 3.9e-30 137.1 151 48.3
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 6.7e-30 136.3 221 39.8
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 4.8e-28 130.2 175 44.6
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 1.8e-27 128.3 389 29.0
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 4.9e-25 120.2 121 57.0
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 1.1e-21 109.0 381 28.3
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 1.5e-21 108.6 89 59.6
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 1.3e-20 105.5 493 26.6
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 2.8e-20 104.4 100 57.0
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 4.1e-19 100.5 120 51.7
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 4.1e-19 100.5 89 57.3
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 9.0e-19 99.4 123 43.9
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.5e-18 98.6 182 35.7
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 2.2e-17 94.7 321 27.1
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 5.0e-17 93.6 288 28.1
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.5e-17 93.2 130 39.2
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 2.1e-15 88.2 110 46.4
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 8.7e-14 82.8 127 38.6
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 5.7e-13 80.1 303 30.0
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 2.5e-08 64.7 161 28.6


User provided reference genes

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