Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 0.0e+00 1377.8 937 100.0
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 7.2e-197 691.8 956 60.7
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 7.2e-197 691.8 956 60.7
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 5.7e-194 682.2 937 62.5
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 2.8e-188 663.3 948 61.5
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.6e-183 647.5 964 59.0
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 1.3e-182 644.4 949 54.5
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 4.7e-180 636.0 946 58.2
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 8.9e-179 631.7 989 47.5
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 2.9e-177 626.7 947 54.8
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 4.9e-177 625.9 949 58.5
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 1.4e-176 624.4 929 58.9
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 2.4e-176 623.6 928 58.3
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 1.2e-175 621.3 975 57.3
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 1.2e-175 621.3 933 59.1
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 2.7e-175 620.2 922 58.0
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.7e-174 617.5 967 56.5
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.1e-173 614.8 932 58.9
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 2.5e-173 613.6 951 58.9
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 4.3e-173 612.8 929 59.5
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 5.6e-173 612.5 935 58.7
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 1.2e-172 611.3 932 58.8
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 2.8e-172 610.1 943 58.5
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 8.1e-172 608.6 931 59.2
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 1.1e-171 608.2 954 58.9
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.4e-171 607.8 868 62.2
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.3e-171 607.1 932 59.1
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 2.3e-171 607.1 934 57.7
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 2.3e-171 607.1 935 60.0
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 1.5e-170 604.4 932 58.9
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 9.8e-170 601.7 930 57.7
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 9.8e-170 601.7 933 58.1
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.2e-169 600.5 950 58.1
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 2.9e-169 600.1 958 58.1
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.7e-169 599.7 931 58.3
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 4.9e-169 599.4 935 59.0
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 6.4e-169 599.0 925 48.5
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 1.1e-168 598.2 929 57.5
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 1.4e-168 597.8 927 59.9
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 1.9e-168 597.4 949 58.1
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 2.4e-168 597.0 950 55.7
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 3.2e-168 596.7 947 57.4
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 5.4e-168 595.9 934 57.2
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 7.1e-168 595.5 958 56.3
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 9.2e-168 595.1 929 58.8
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 2.1e-167 594.0 939 58.1
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 6.0e-167 592.4 949 56.4
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 1.0e-166 591.7 929 57.8
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 1.0e-166 591.7 931 57.6
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 1.3e-166 591.3 952 57.7
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 3.9e-166 589.7 935 58.8
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 5.1e-166 589.3 931 57.9
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 1.5e-165 587.8 943 48.7
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 1.9e-165 587.4 950 57.3
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.9e-165 587.4 930 58.4
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 2.5e-165 587.0 929 58.0
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 5.6e-165 585.9 972 38.6
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 5.6e-165 585.9 931 58.3
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 5.6e-165 585.9 932 58.7
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 9.5e-165 585.1 931 57.8
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 1.6e-164 584.3 950 56.8
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.6e-164 584.3 931 57.6
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 2.8e-164 583.6 946 57.3
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 4.7e-164 582.8 959 56.9
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 4.7e-164 582.8 929 57.9
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 8.1e-164 582.0 954 57.1
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 3.1e-163 580.1 945 58.1
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 8.9e-163 578.6 948 56.9
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 2.6e-162 577.0 949 57.1
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 3.4e-162 576.6 953 55.8
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 3.4e-162 576.6 972 45.8
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 7.6e-162 575.5 931 57.3
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 6.4e-161 572.4 954 56.5
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 1.1e-160 571.6 949 57.7
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 1.4e-160 571.2 951 57.0
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 3.2e-160 570.1 956 57.4
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 7.1e-160 568.9 953 56.9
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 7.1e-160 568.9 959 57.0
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.5e-159 566.6 962 56.4
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 4.6e-159 566.2 962 56.8
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 1.0e-158 565.1 951 57.0
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.1e-158 562.8 959 56.9
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.1e-157 561.6 959 56.8
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 5.6e-157 559.3 931 56.0
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 9.6e-157 558.5 993 54.6
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 1.2e-156 558.1 949 49.1
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 2.1e-156 557.4 926 56.4
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 2.8e-156 557.0 926 56.4
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 2.8e-156 557.0 930 56.7
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 2.8e-156 557.0 935 56.0
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 6.2e-156 555.8 926 56.2
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 6.2e-156 555.8 940 56.3
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 8.1e-156 555.4 923 56.7
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 8.1e-156 555.4 962 56.3
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 5.2e-155 552.7 925 56.4
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 1.5e-154 551.2 763 56.0
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 9.9e-154 548.5 896 58.5
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 4.2e-152 543.1 922 56.1
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 1.7e-150 537.7 1104 50.2
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 2.3e-150 537.3 937 54.9
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 3.0e-150 537.0 946 55.0
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 6.2e-148 529.3 948 55.2
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 3.4e-146 523.5 949 55.5
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 3.4e-146 523.5 948 53.2
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 3.2e-144 516.9 954 54.9
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 1.6e-143 514.6 760 53.9
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 5.1e-142 509.6 823 60.0
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 5.8e-138 496.1 1012 46.6
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 7.4e-133 479.2 915 50.7
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 4.0e-131 473.4 874 55.1
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 1.5e-117 428.3 934 43.5
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 6.9e-115 419.5 943 49.3
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 5.3e-107 393.3 952 43.4
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 5.4e-83 313.5 645 34.4
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 5.2e-78 297.0 744 44.8
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.9e-74 283.5 591 50.4
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 8.6e-65 253.1 590 33.9
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 1.3e-60 239.2 338 44.4
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 9.9e-37 159.8 131 60.3
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 3.9e-33 147.9 127 57.5
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 5.3e-30 137.5 135 51.9
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.0e-29 135.6 180 42.8
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 4.2e-27 127.9 123 51.2
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 4.6e-26 124.4 139 45.3
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.3e-25 122.1 183 39.3
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 1.3e-23 116.3 94 59.6
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 2.0e-21 109.0 123 46.3
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.7e-15 88.2 79 54.4
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.4e-14 86.3 102 47.1
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 5.8e-13 80.9 104 43.3
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 4.2e-11 74.7 83 48.2
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 7.1e-11 73.9 76 51.3
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 7.9e-10 70.5 66 51.5
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 3.9e-09 68.2 83 44.6
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 5.1e-09 67.8 56 60.7
CARHR237730 Cardamine hirsuta HOM05D005151 ORTHO05D006322 6.9e-06 57.4 183 27.3


User provided reference genes

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