Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 8.6e-45 183.3 97 100.0
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 7.9e-22 107.1 90 57.8
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.0e-21 106.7 90 58.9
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.0e-21 106.7 90 58.9
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.8e-21 105.9 90 60.0
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 2.3e-21 105.5 90 56.7
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.0e-21 105.1 90 56.7
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.0e-21 105.1 90 56.7
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 3.0e-21 105.1 90 56.7
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 3.9e-21 104.8 90 56.7
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 3.9e-21 104.8 90 56.7
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 3.9e-21 104.8 90 56.7
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 3.9e-21 104.8 90 56.7
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 3.9e-21 104.8 90 56.7
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 3.9e-21 104.8 90 56.7
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 3.9e-21 104.8 90 56.7
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 6.7e-21 104.0 90 57.8
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 6.7e-21 104.0 90 56.7
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 8.7e-21 103.6 90 58.9
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 1.5e-20 102.8 90 56.7
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 1.5e-20 102.8 90 55.6
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 1.9e-20 102.4 90 55.6
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.9e-20 102.4 90 56.7
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 2.5e-20 102.1 90 55.6
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 2.5e-20 102.1 90 54.4
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 5.6e-20 100.9 90 53.3
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 5.6e-20 100.9 90 53.3
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 5.6e-20 100.9 90 53.3
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 5.6e-20 100.9 90 55.6
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 5.6e-20 100.9 90 53.3
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 5.6e-20 100.9 90 55.6
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 7.4e-20 100.5 90 54.4
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 7.4e-20 100.5 90 54.4
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 7.4e-20 100.5 90 54.4
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 7.4e-20 100.5 90 54.4
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 7.4e-20 100.5 90 54.4
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 7.4e-20 100.5 90 54.4
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 7.4e-20 100.5 90 54.4
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 7.4e-20 100.5 90 54.4
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 7.4e-20 100.5 90 54.4
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.3e-19 99.8 90 54.4
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 1.3e-19 99.8 90 54.4
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 1.3e-19 99.8 90 54.4
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.3e-19 99.8 90 54.4
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.3e-19 99.8 90 54.4
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.3e-19 99.8 90 54.4
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.3e-19 99.8 90 56.7
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.6e-19 99.4 90 55.6
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.6e-19 99.4 90 55.6
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 1.6e-19 99.4 84 59.5
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 1.6e-19 99.4 84 59.5
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 2.1e-19 99.0 90 54.4
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 2.8e-19 98.6 90 55.6
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.8e-19 97.8 90 53.3
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.8e-19 97.8 90 53.3
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 4.8e-19 97.8 90 54.4
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 6.2e-19 97.4 90 53.3
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 8.2e-19 97.1 84 57.1
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 1.4e-18 96.3 82 58.5
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 1.8e-18 95.9 91 53.8
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 1.8e-18 95.9 90 54.4
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-18 95.9 90 52.2
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 1.8e-18 95.9 84 53.6
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 3.1e-18 95.1 90 53.3
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 4.0e-18 94.7 84 54.8
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 4.0e-18 94.7 83 59.0
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 5.3e-18 94.4 90 51.1
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.3e-18 94.4 90 52.2
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 6.9e-18 94.0 79 57.0
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 9.0e-18 93.6 90 60.0
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 1.5e-17 92.8 79 58.2
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 1.5e-17 92.8 79 58.2
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 1.5e-17 92.8 79 58.2
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 1.5e-17 92.8 79 58.2
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 1.5e-17 92.8 79 58.2
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 2.6e-17 92.0 79 55.7
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 2.6e-17 92.0 79 55.7
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.6e-17 92.0 78 60.3
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 2.6e-17 92.0 78 60.3
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.6e-17 92.0 78 60.3
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 2.6e-17 92.0 78 60.3
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.6e-17 92.0 78 60.3
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.6e-17 92.0 78 60.3
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.6e-17 92.0 78 60.3
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.6e-17 92.0 78 60.3
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 4.5e-17 91.3 90 48.9
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 4.5e-17 91.3 90 48.9
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 4.5e-17 91.3 90 48.9
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 4.5e-17 91.3 77 61.0
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 7.6e-17 90.5 78 60.3
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 1.0e-16 90.1 78 59.0
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.3e-16 89.7 88 48.9
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.3e-16 89.7 90 50.0
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 1.3e-16 89.7 90 48.9
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 2.2e-16 89.0 90 53.3
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 2.9e-16 88.6 73 58.9
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.9e-16 88.6 90 48.9
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.9e-16 88.6 78 57.7
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 4.9e-16 87.8 79 54.4
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 4.9e-16 87.8 79 54.4
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 4.9e-16 87.8 79 54.4
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 6.5e-16 87.4 90 51.1
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.1e-15 86.7 80 51.2
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 1.9e-15 85.9 76 57.9
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 2.5e-15 85.5 79 54.4
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.2e-15 85.1 75 56.0
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 4.2e-15 84.7 90 50.0
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 5.5e-15 84.3 78 53.8
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.1e-15 84.0 90 46.7
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 2.1e-14 82.4 83 48.2
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 2.1e-14 82.4 90 44.4
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 2.1e-14 82.4 90 44.4
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.5e-14 81.6 67 58.2
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 6.0e-14 80.9 68 58.8
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 6.0e-14 80.9 90 43.3
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.3e-13 79.7 67 56.7
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.9e-13 78.2 90 47.8
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 8.7e-13 77.0 90 43.3
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.1e-12 76.6 79 50.6
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.3e-12 75.1 60 61.7
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 4.3e-12 74.7 83 44.6
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 4.3e-12 74.7 54 70.4
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 5.7e-12 74.3 77 49.4
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 7.4e-12 73.9 78 46.2
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 2.8e-11 72.0 51 68.6
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.8e-11 72.0 63 55.6
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 4.8e-11 71.2 77 46.8
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 2.0e-09 65.9 90 41.1
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.6e-09 65.5 64 50.0
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 5.9e-09 64.3 69 49.3
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 1.3e-08 63.2 89 42.7
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 1.9e-07 59.3 54 51.9
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 2.5e-07 58.9 42 66.7
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 5.5e-07 57.8 56 48.2
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 9.3e-07 57.0 62 48.4
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 4.6e-06 54.7 56 46.4


User provided reference genes

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