Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 0.0e+00 1143.6 559 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 2.4e-179 632.9 501 62.5
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 2.2e-169 599.7 520 57.3
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 2.1e-167 593.2 505 59.8
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 3.9e-166 589.0 492 59.6
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 1.1e-165 587.4 490 60.0
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 1.5e-165 587.0 505 58.4
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 2.0e-165 586.6 490 59.8
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 2.0e-165 586.6 489 58.7
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 3.3e-165 585.9 505 58.4
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 5.7e-165 585.1 488 60.2
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 9.7e-165 584.3 490 59.8
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 2.2e-164 583.2 493 59.6
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 1.8e-163 580.1 495 57.8
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 1.8e-163 580.1 521 56.4
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 5.3e-163 578.6 495 57.6
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 5.3e-163 578.6 495 58.2
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 7.0e-163 578.2 495 57.8
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 9.1e-163 577.8 497 57.7
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 1.5e-162 577.0 488 58.4
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 2.0e-162 576.6 499 57.1
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 2.6e-162 576.2 497 58.1
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 2.6e-162 576.2 495 57.6
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 3.5e-162 575.9 490 57.8
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 4.5e-162 575.5 495 57.6
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 5.9e-162 575.1 491 58.5
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 1.7e-161 573.5 504 57.7
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 2.2e-161 573.2 488 58.2
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 2.9e-161 572.8 495 57.6
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 3.8e-161 572.4 495 57.6
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 8.5e-161 571.2 494 58.5
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 1.1e-160 570.9 488 58.6
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 1.9e-160 570.1 488 57.8
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 1.9e-160 570.1 488 58.2
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 2.5e-160 569.7 494 58.1
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 5.5e-160 568.5 490 57.1
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 7.2e-160 568.2 494 57.3
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 9.4e-160 567.8 492 56.7
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 1.2e-159 567.4 491 57.8
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 2.1e-159 566.6 495 56.6
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 2.7e-159 566.2 493 57.2
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 3.6e-159 565.8 490 57.1
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 4.7e-159 565.5 496 57.5
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 4.7e-159 565.5 501 55.9
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 8.0e-159 564.7 488 57.4
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 1.0e-158 564.3 493 56.0
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 1.0e-158 564.3 490 57.8
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 1.4e-158 563.9 494 58.3
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 1.8e-158 563.5 493 57.2
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 3.9e-158 562.4 488 57.0
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 5.2e-158 562.0 495 57.2
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 6.7e-158 561.6 490 57.8
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.5e-157 560.5 499 55.3
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 2.0e-157 560.1 498 56.2
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 2.0e-157 560.1 502 56.2
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 2.6e-157 559.7 495 57.0
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 3.3e-157 559.3 489 57.5
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 3.3e-157 559.3 498 56.6
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 3.3e-157 559.3 501 55.9
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 7.4e-157 558.1 493 57.6
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 9.7e-157 557.8 489 56.2
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 1.3e-156 557.4 496 56.2
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 1.3e-156 557.4 494 56.1
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 1.7e-156 557.0 488 56.8
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 2.2e-156 556.6 489 57.3
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 2.8e-156 556.2 488 57.4
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 3.7e-156 555.8 489 57.5
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 6.3e-156 555.1 493 56.0
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 8.2e-156 554.7 488 57.0
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 1.1e-155 554.3 495 55.8
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 1.8e-155 553.5 491 56.6
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 1.8e-155 553.5 493 56.0
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 5.3e-155 552.0 498 56.4
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 7.0e-155 551.6 498 56.4
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 7.0e-155 551.6 488 56.6
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 9.1e-155 551.2 498 56.8
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.2e-154 550.8 482 56.8
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 2.0e-154 550.1 490 57.8
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 3.5e-154 549.3 498 56.2
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 1.0e-153 547.7 498 55.2
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 2.9e-153 546.2 490 57.8
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 6.5e-153 545.0 489 55.8
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 5.5e-152 542.0 495 58.4
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 9.4e-152 541.2 488 56.6
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 1.0e-150 537.7 492 55.3
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 8.8e-150 534.6 524 54.8
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.6e-149 533.1 516 54.3
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 7.5e-149 531.6 488 54.9
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 3.7e-148 529.3 490 54.3
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 2.4e-147 526.6 511 53.4
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 3.1e-147 526.2 452 58.4
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 1.0e-145 521.2 488 54.3
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.2e-145 520.0 514 53.3
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 6.1e-143 511.9 572 48.3
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 1.0e-137 494.6 414 58.7
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 7.2e-136 488.4 464 54.1
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 2.8e-132 476.5 493 49.5
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 4.5e-130 469.2 625 43.8
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 2.3e-129 466.8 626 43.6
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 5.6e-128 462.2 487 50.3
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 9.5e-120 434.9 415 54.0
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 8.3e-116 421.8 486 46.7
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 1.1e-110 404.8 377 53.3
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 6.4e-108 395.6 523 43.4
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 2.8e-103 380.2 502 39.6
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 8.1e-103 378.6 498 42.2
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 2.0e-101 374.0 529 42.5
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 3.5e-98 363.2 324 57.1
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 1.5e-88 331.3 621 35.9
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 1.6e-87 327.8 306 56.2
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 6.9e-86 322.4 510 37.3
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 2.8e-79 300.4 533 35.6
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 9.0e-78 295.4 523 39.0
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.4e-59 235.0 190 62.6
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 7.4e-56 222.6 205 54.1
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 6.5e-44 183.0 163 55.2
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 1.8e-41 174.9 141 63.1
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 5.9e-37 159.8 145 58.6
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 6.3e-31 139.8 100 72.0
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 7.5e-24 116.3 110 59.1
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 3.7e-23 114.0 125 44.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 2.8e-18 97.8 104 47.1
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 2.3e-17 94.7 68 67.6
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 2.3e-17 94.7 100 53.0
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.3e-15 89.0 63 61.9
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 7.8e-13 79.7 61 55.7
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 2.1e-10 71.6 57 57.9
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 6.4e-07 60.1 66 48.5
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 1.9e-06 58.5 48 56.2
CDE05G3222 Ceratophyllum demersum HOM05D004849 ORTHO05D005955 3.2e-06 57.8 83 38.6
Glyma.07G258000 Glycine max HOM05D004849 ORTHO05D005955 4.1e-06 57.4 94 39.4
ATR0626G348 Amborella trichopoda HOM05D004849 ORTHO05D005955 7.0e-06 56.6 83 38.6
Carub.0006s1751 Capsella rubella HOM05D004849 ORTHO05D005955 9.2e-06 56.2 84 38.1


User provided reference genes

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